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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcactttgtgtgagccattctgatttcaagagatatcatgtctatggatttgcatatttttcttttgttggcattcgtgcacaagaaaaggaggaaagaaacaattgaatagaagtagtatttctgagtgtgcagATGCTTATGGGAGGAGGTGGGTCATTCTCAGCCGGAGGGCCTGGGAAAGGGATGCACTCAAGGCTGT

Basic information

species Glycine max
transcript GLYMA15G02390.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02390.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os01g53700.1 (Oryza sativa), 3'ss of exon 6
---------gtactcactttgtgtgagccattctgatttcaagagatatcatgtctatggatttgcatatttttcttttgttggc-attcg--tgcacaagaaaaggaggaaagaaaca-attgaatagaagtagtatttctgagtgtgcagATGCTTATGGGAGGAGGTGGGTCATTCTCAGCCGGAGGGCCTGGGAAAGGGATGCACTCAAGGCTGT
         | |  ||     | | | |||||   |||   ||| | | |    ||||||  |  | | | | |  |||  || | | | |  |||   | |     |  |       | |   ||||    | || ||  | | | |||||||||| |||||||||||||| || ||||| || || || |||||||| || ||||| ||  |  |||
gtattgttggcaaacatcaaatttaa-ccatt---attcagagacaaaactcaactatggtataccttttatgtagtttactgtctagtagactgccttatatgttcaccatttctttatacgcaatatggatggtcttgtt-attttgcagATGCTCATGGGAGGAGGTGGTTCTTTCTCTGCTGGTGGTCCTGGGAAGGGCATGCATTCTCGATTGT

upper sequence: GLYMA15G02390.1 (Glycine max), 3'ss of exon 6
lower sequence: AT3G16480.1 (Arabidopsis thaliana), 3'ss of exon 6
gtactcactttgtgtgagccattctgatttcaagagatatcatgtctatggatttgcatatttttcttttgttggcattcgtgcacaagaaaaggaggaaagaaacaattgaatagaagtagtatttctgagtgtgcagATGCTTATGGGAGGAGGTGGGTCATTCTCAGCCGGAGGGCCTGGGAAAGGGATGCACTCAAGGCTGT
                                          || ||   || |   |||  || |||    |    |||   | |||            |||   |||||  || ||     | |||| |     ||||||||||||||||||||||| ||||| || || ||||| ||||| ||||| ||||||||  |||| |
-----------------------------------------gtgcct---gactcaaatacattacttgatct----ttcaaacgcaa------------agacttaattgtgtaaaatc--caattcttat----cagATGCTTATGGGAGGAGGTGGCTCATTTTCTGCGGGAGGCCCTGGAAAAGGAATGCACTCTTGGCTCT

upper sequence: GLYMA15G02390.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G51980.2 (Arabidopsis thaliana), 3'ss of exon 6
gtactcactttgtgtgagccattctgatttcaagagatatcatgtctatggatttgcatatttttcttttgttggcattcgtgcacaagaaaaggaggaaagaaacaattgaatagaagtagtatttctgagtgtgcagATGCTTATGGGAGGAGGTGGGTCATTCTCAGCCGGAGGGCCTGGGAAAGGGATGCACTCAAGGCTGT
                           | || |     ||  |   | | | ||    ||  ||||  |||||   ||            |  || |  || ||  |||  |||  ||    || ||   | |    |||||||||||||||||||||| |||||||| || ||||| ||||| ||||| ||||||||  |||| |
--------------------------gtgtctaattgaattttactttttggttgctttaactttcacttgtttcgatcaaattttttttactggcg--aaaaagtaataaaatgtaatc--taattgctatt----agATGCTTATGGGAGGAGGTGGCTCATTCTCTGCGGGAGGTCCTGGAAAAGGAATGCACTCGTGGCTTT

upper sequence: GLYMA15G02390.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0002g03200.t01 (Vitis vinifera), 3'ss of exon 6
-------------------------------------gta-ctcactttgtgtgagccattctgatttca-agagatat-catgtctatggatttgcatatttttcttttgttggcattcgtgcacaagaaaaggaggaaagaaacaattgaatagaagtagtatttctgagtgtgcagATGCTTATGGGAGGAGGTGGGTCATTCTCAGCCGGAGGGCCTGGGAAAGGGATGCACTCAAGGCTGT
                                      || ||| || | | |    |  |||   |  | | | ||||  || | |||  || |  |||| ||  | ||       ||| | ||      | |               | || | | ||  || | |       |||||||||||||||||||||||| |||||||| || || || ||||| ||||| ||||||||| | || |
gtgctgcatttgatcttttcttcttaaagagattctgctatctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatattcatattccctcttttcattcatccaccatgttttccttttttgcattaagaaatgtgatagtcc------cgcagATGCTTATGGGAGGAGGTGGCTCATTCTCTGCGGGGGGCCCTGGAAAAGGAATGCACTCACGACTAT

upper sequence: GLYMA15G02390.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv10s0003g03230.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------------------------------gtactcactttgtgtgagccattctgatttca-agagatat-catgtctatggatttgcatatttttcttttgttggcattcgtgcacaagaaaaggaggaaagaaacaattgaatagaagtagtatttctgagtgtgcagATGCTTATGGGAGGAGGTGGGTCATTCTCAGCCGGAGGGCCTGGGAAAGGGATGCACTCAAGGCTGT
                                                       ||| || | | |    |  |||   |  | | | ||||  || | |||  || |  |||| | |    | ||  ||||| | |||     | |               | || | | ||  || | |      ||||||| ||||||||||||||||| ||||||||  | || || ||||| ||||| ||||||||| | || |
gtgctgcatttgatcttttcttcttaaagagattctgctatttggaaatctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatattccctcttttcattcatccac----catgttttccttttttgcattaagaaatgtgatagtcc------tgcagATACTTATGGGAGGAGGTGGCTCATTCTCTACGGGGGGCCCTGGAAAAGGAATGCACTCACGACTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaagaaaaggaggaaagaaacaattgaatagaagtagtatttctgagtgtgcagATGCTTATGGGAGGAGGTGGGTCATTCTCAGCCGGAGGGCCTGGGAAAGGGATGCACTCAAGGCTGT
                      aattgaata  TA-rich tract