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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgaagcactcaattggtgcaataactactaactagataaaattgaccttaattattcttttccctttgtaccactaattagtatatgcatattgatcactactagtactaggtactaatttcttccatgaaatatgcaatgcagGTTCTAGCCAAGTTATTGCTCAGTACTACCAACTAATTCGACTGGGTTATGAG

Basic information

species Glycine max
transcript GLYMA14G39170.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G39170.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv04s0079g00600.t01 (Vitis vinifera), 3'ss of exon 4
gtaattgaagcactcaattggtgcaataactactaactagataaaattgaccttaattattcttttccctttgtaccactaattagtatatgcatattgatcactactagtactaggtactaatttcttccatgaaatatgcaatgcagGTTCTAGCCAAGTTATTGCTCAGTACTACCAACTAATTCGACTGGGTTATGAG
                                                   |  || || |  |    |||||      |  ||  |      ||  | || |  |    | ||| ||| ||||||    |          ||||||||||||||| ||||||||||||||||| || ||||| |||||  ||||  |||||
-------------------------------------------gtccccttccaaactactgctacatctttgagatcttttttgatg-----atcataat-ataatgcatgctaagtattaattttcctcc---------caatgcagGTTCTAGTCAAGTTATTGCTCAGTATTATCAACTCATTCGCTTGGGCCATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgatcactactagtactaggtactaatttcttccatgaaatatgcaatgcagGTTCTAGCCAAGTTATTGCTCAGTACTACCAACTAATTCGACTGGGTTATGAG
                       tactaat  putative branch site (score: 1)
                       tactaattt  TA-rich tract