1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaaaaagggtcaagccattggctaaggctaatgattttatgcattattatttagctaatttcaaatgtgaacacaaaagggtgttgtgaatgttttgtagGTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCTAATGATTACAACAATTTCACTAGAAGGGCTTATGTGAGCAAAGCCAAGA
species | Glycine max |
transcript | GLYMA14G39050.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGAGGCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCT GTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCTEST: gi|192307399|gb|FK000755.1|FK000755
genomic: ATGAGGCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCTgtaagaaatt ... tgttttgtagGTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCT
EST: ATGAGGCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCT GTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCTEST: gi|9984439|gb|BE658547.1|BE658547
genomic: ATGAGGCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCTgtaagaaatt ... tgttttgtagGTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCT
EST: GAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCT GTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCTEST: gi|207805285|gb|GD777291.1|GD777291
genomic: GAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCTgtaagaaatt ... tgttttgtagGTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCT
EST: ATGAGGCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCT GTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGEST: gi|7691635|gb|AW759759.1|AW759759
genomic: ATGAGGCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCTgtaagaaatt ... tgttttgtagGTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAG
EST: ATGAGGCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCT GTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCTEST: gi|192306702|gb|FG998856.1|FG998856
genomic: ATGAGGCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCTgtaagaaatt ... tgttttgtagGTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCT
EST: GCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCT GTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCTEST: gi|14008589|gb|BG725193.1|BG725193
genomic: GCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCTgtaagaaatt ... tgttttgtagGTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCT
EST: ATGAGGCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCT GTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCTEST: gi|209725819|gb|BW659935.1|BW659935
genomic: ATGAGGCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCTgtaagaaatt ... tgttttgtagGTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCT
EST: ATGAGGCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCT GTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCTEST: gi|192307398|gb|FK000754.1|FK000754
genomic: ATGAGGCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCTgtaagaaatt ... tgttttgtagGTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCT
EST: ATGAGGCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCT GTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCT
genomic: ATGAGGCAGAAAAGGGAGTGACGGAGCTTAATGAAGCTAGCAGATGGCCTgtaagaaatt ... tgttttgtagGTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCT
attatttagctaatttcaaatgtgaacacaaaagggtgttgtgaatgttttgtagGTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCTAATGATTACAACAATTTCACTAGAAGGGCTTATGTGAGCAAAGCCAAGA
agctaat putative branch site (score: 3)
taatttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaaagggtcaagccattggctaaggctaatgattttatgcattattatttagctaatttcaaatgtgaacacaaaagggtgttgtgaatgttttgtagGTATGGGCGTCTTTGCTATTGTATCGCCAAATATTGGACGAGATAGAAGCTAATGATTACAACAATTTCACTAGAAGGGCTTATGTGAGCAAAGCCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
gaaaaag
- - - - - caagcca
- - - - - - - - - - - - - gctaatg
- - - - - - - - - - - - - - - - - - - -tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtgtt