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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacctggaaaaaaaaatgccacattcccatctgtagttcatctaatttagtaaaataaaatatttgaaaatgaataatttcattagtttcttttccttagGTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAG

Basic information

species Glycine max
transcript GLYMA14G37520.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37520.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os03g18310.1 (Oryza sativa), 3'ss of exon 5
tacctggaaaaaaaaatgccacattcccatctgta-gttcatctaatttagtaaaat--aaaata--tttgaaaatgaataatttcattagtttcttttccttagGTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAG
        |  || ||||    ||| |  ||  |  ||| |  || |||| ||   |  ||| ||  |||| |  |      |  |  | ||          |||||  | ||||||||||| || ||||| |  || || ||||| || ||||| || |||||||||||||||||| | || ||||||||||||||||| |||
-----catatgaagaatgaataatttctgtcaatgtgttgaaatactttattatgcttcaaattacctttgcagttcttctgtaaccattgtgctgccattctagGTTGGGTTGCCAGCTCGTGGTAAGACCTTTACAGCGGCTAAGCTTACAAGGTACCTTCGATGGTTAGGTCATGAAACAAAACACTTCAATGTTGGAAAG

upper sequence: GLYMA14G37520.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os05g07130.1 (Oryza sativa), 3'ss of exon 6
tacctggaaaaaaaaatgcc--acattcccatctgtagttcatctaatttagtaaaataaaatatttgaaaatgaataatttcattagtttcttttcctt------agGTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAG
    | | | || || |       ||| |    |    ||||| |   | | |        || ||  |||    ||  | |   ||      | | |||      ||||  |  | |||||||| || || ||||  || |||||||| || ||||| || ||||| |||||||||||| | |||| ||| ||||||||||| |||
----tagtataataattatttgttattgcatcttaagattcatttgtatcactgctt----attttgaaaagcagattttcttcctaaacatgtctacttgcaaacagGTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAG

upper sequence: GLYMA14G37520.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM5G824405_T01 (Zea mays), 3'ss of exon 6
tacctggaaaaaaaaatgccacattccc-atctgtagttcatctaatttagtaaaataaaatatttgaaaatgaataatttcattagtttctt-ttccttagGTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAG
 | ||||||  |     |  |        |  |||  ||| |    | |   | |  |  ||   || |  |   |  ||| || |  | ||  |    |||||  |  | ||||||||||| ||||| |  || ||||||||||| ||||||||||| ||||||||||||||| | || ||||||||||||||||| |||
-agctggaactattccagttaatccattgagatgtctttctttctttctttcagataagtatgcatgcagttctttt-tttaatcatctgctgatattctagGTTGGGCTACCAGCTCGAGGTAAGACCTTTACAGCAGCTAAACTTACAAGATATCTCCGATGGTTAGGTCATGAAACAAAACACTTCAATGTTGGAAAG

upper sequence: GLYMA14G37520.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 3'ss of exon 6
-tacctggaaaaaaaaatgccacattcccatctgtagttcatctaatttagtaaaataaaatatttgaaaatgaataatttcattagtttcttttccttagGTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAG
  | ||   |  || |       | | |||| ||| |  | |  || ||  |  |  ||  |  || |||||||||  ||  |  |  || | |   | ||||  | |||||||||||||| || ||||  |||||||||||||| |||||||||||||| ||||| |||||| | |||||||||||||||||||| |||
gcaacttccagtaacagcaggttaattccatttgttgcacctaaaaattcatttaccaattttgttaaaaatgaatggttgtaacaaatt-tatatttcagGTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAG

upper sequence: GLYMA14G37520.1 (Glycine max), 3'ss of exon 14
lower sequence: PP1S235_92V6.1 (Physcomitrella patens), 3'ss of exon 5
tacctggaaaaaaaaatgccacattcccatctgtagttcatctaatttagtaaaataaaatatttgaaaatgaataatttcattagtttcttttc-----cttagGTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAG
        ||  ||  |   ||||| | | ||  |||||  ||  || |  | |  | |   | |  ||     | |  |  | |  || |  |       | ||||  |  | || |||||||| |||||||  || |||||||| || || ||||||||  | ||| | || ||| |||||||||||||||||||||| |||
-----tacaacgaacttcttacattacaagcttaagttcgactgcttgaaaatatcatagcttcttcaagcatgttacatactgaacttgtcatggtggattcagGTTGGCCTACCTGCTCGAGGGAAGACTTTTACAGCAGCTAAGCTGACGAGATATCTCAGGTGGCTTGGCCATGATACCAAACACTTCAATGTTGGAAAG

upper sequence: GLYMA14G37520.1 (Glycine max), 3'ss of exon 14
lower sequence: PP1S215_89V6.1 (Physcomitrella patens), 3'ss of exon 7
----tacctggaaaaaaaaatgccacattcccatctgtagttcatctaatttagtaaaataaaatat--ttgaaaatgaataatttcattagtttcttttccttagGTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAG
    | ||| | |    |      |   |   || ||    |   | |||| |      |||  ||   | | |  ||||| | |       | |  |    | ||||  | || || ||||| || ||||| | ||||||||||||||| || |||||| | || |||||||||||| | ||||| |||||||||||||| |||
tgctttcctagtagtgtattgttgagcgtataatgtgattgtggccaaattcacgctgttaagctacgctgggagttgaatgagtc------tctgatggtttcagGTTGGGTTACCGGCTCGTGGAAAGACATTCACTGCAGCTAAACTGACCAGATATTTGCGGTGGTTAGGTCATGACACCAAGCACTTCAATGTTGGCAAG

upper sequence: GLYMA14G37520.1 (Glycine max), 3'ss of exon 14
lower sequence: PP1S242_66V6.1 (Physcomitrella patens), 3'ss of exon 7
-------tacctggaaaaaaaaatgc-cacattcccat-ctgtagttcatctaatttagtaaaataaaatatttgaaaatgaataatttcattagtttcttttccttagGTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAG
       | ||    |  |    ||   | |||  | | ||||||   |  |   | | ||  |    || || | |  |||| || |||  ||||  ||       ||||  | ||||| || || || ||||||| |||||||||||| || ||  ||||| | |||||| |||||||| ||||||| ||||| ||||| || |||
atcggggtgcccattattatggttggatatattatcttgctgtagccaagtt--ctcaatatcaagctatgttgggagttgaacaagttc--tagtgactac-----agGTTGGGTTGCCGGCGCGTGGAAAGACTTTCACTGCAGCTAAGCTGACCCGATATTTGCGATGGCTAGGTCATGATACCAAGCACTTTAATGTCGGCAAG

upper sequence: GLYMA14G37520.1 (Glycine max), 3'ss of exon 14
lower sequence: EFJ07288 (Selaginella moellendorffii), 3'ss of exon 2
tacctggaaaaaaaaatgccacattcccatctgtagttcatctaatttagtaaaataaaatatttgaaaatgaataatttcattagtttcttttccttagGTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAG
                                                 ||| | |    |  ||     | | |  | || ||   |    |||   ||||| | || |||||  | || || |||| |||||| |  || ||||||||||||||||| ||| | |||||| | || ||||||||||| ||||| || 
-------------------------------------------------gtagattgtcgtcattct---taactcttatctttgaatcgggttctacagGTGGGCTTACCAGCAAGGGGGAAAACTTTCACTGCTGTCAAGCTAACAAGATATCTTCGTTGGCTTGGTCATGACACTAAACACTTCAACGTTGGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagtaaaataaaatatttgaaaatgaataatttcattagtttcttttccttagGTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAG
                                tttcattagtttcttt  CT-rich tract
     taaaataaaatatttg  TA-rich tract