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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctattttcagtcatgtaaaaacaatttattttttttggttagaagtcttctgcctctaatataatgttcatattctttgttatcacagGAGATTGCACCACGGTATTCTGGTGTTTTACATG

Basic information

species Glycine max
transcript GLYMA14G36980.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G36980.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g06040.t01 (Vitis vinifera), 3'ss of exon 6
gtttctattttcagtca--tgtaaaaacaatttattttttttggttagaagtcttctgcctctaatataatgttcatattctttgttatcacagGAGATTGCACCACGGTATTCTGGTGTTTTACATG
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gttggcatacccacaaaaccctgagttaaatcagaacctagtagagatttttcactttcttctaacatttttcttat-tcttttgtgtttccagGAGATTGCACCACAGTATTCTGGTGTTCTACATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggttagaagtcttctgcctctaatataatgttcatattctttgttatcacagGAGATTGCACCACGGTATTCTGGTGTTTTACATG
                    ctctaat  putative branch site (score: 3)
                                       ttctttgtt  putative PPT
                       taatataatgttcata  TA-rich tract