1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aacatatttacttagaaaaggagctgcaatttgtggcagtcttttgtaaagtgacacaaggctgaacctgatgcttttcttgaactgtgaatatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGCAGAAAGACAATTGGAGAGGCTAATGAAACTAGCATTCTCATTTGTTGA
species | Glycine max |
transcript | GLYMA14G36610.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|254347199|gb|GR856869.1|GR856869
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG -AGAGGGTGGGCTGCAAGTCACCTGTTGA-GCATTAGEST: gi|151407616|gb|EV277431.1|EV277431
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|254332850|gb|GR850100.1|GR850100
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|151406931|gb|EV276746.1|EV276746
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCTCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAG-AGAGATAAG-AAGEST: gi|58017863|gb|CX704605.1|CX704605
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|192331092|gb|FK020312.1|FK020312
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGCTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAG-AGAGATAAG-AAGEST: gi|254333893|gb|GR848811.1|GR848811
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|298171750|gb|HO021342.1|HO021342
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTCTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|209706271|gb|BW676286.1|BW676286
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|58020634|gb|CX707376.1|CX707376
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGTTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|58017298|gb|CX704040.1|CX704040
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|58024271|gb|CX711012.1|CX711012
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|254345800|gb|GR859447.1|GR859447
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|208037472|gb|GD833539.1|GD833539
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|151411907|gb|EV281718.1|EV281718
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGCTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAG-AGAGATAAG-AAGEST: gi|208268931|gb|GE069800.1|GE069800
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|58021215|gb|CX707957.1|CX707957
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|254322038|gb|GR837452.1|GR837452
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|151406677|gb|EV276492.1|EV276492
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAAACCGATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAG-AGAGATAAG-AAGEST: gi|6665847|gb|AW277297.1|AW277297
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|254335322|gb|GR846819.1|GR846819
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGEST: gi|254335321|gb|GR846818.1|GR846818
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
EST: ATGAGTTGGAGACCAATCCCTTTATGAGG-TTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTEST: gi|254340015|gb|GR858140.1|GR858140
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCT
EST: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAG GAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
genomic: ATGAGTTGGAGACCAATCCCTTTATGAGGGTTGATCTACCTGAGATCCAGgtttgtcatc ... atatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAG
gtaaagtgacacaaggctgaacctgatgcttttcttgaactgtgaatatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGCAGAAAGACAATTGGAGAGGCTAATGAAACTAGCATTCTCATTTGTTGA
acctgat putative branch site (score: 4)
tatttcc putative PPT
tgaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacatatttacttagaaaaggagctgcaatttgtggcagtcttttgtaaagtgacacaaggctgaacctgatgcttttcttgaactgtgaatatttccagGAGAGGGTGGGCTGCAAGTCACCTGTTGAAGCATTAGGAGAGATAAGGAAGCAGAAAGACAATTGGAGAGGCTAATGAAACTAGCATTCTCATTTGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - gagctgc
- - - - - - - - - - - - - - - ttgtggc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactgtg