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...aatggtgtttagttttgggattcatttgtttgatatacagctgaatcatcttaacttattagctagcagattaattatttagttttaacctttgttgcagGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTGGGCAAATATCTGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTG
species | Glycine max |
transcript | GLYMA14G36540.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAG GCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTEST: gi|254319588|gb|GR829100.1|GR829100
genomic: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGgttggagttt ... tttgttgcagGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCT
EST: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAG GCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTEST: gi|120533350|gb|EH261483.1|EH261483
genomic: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGgttggagttt ... tttgttgcagGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCT
EST: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAG GCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTEST: gi|192323797|gb|FK015608.1|FK015608
genomic: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGgttggagttt ... tttgttgcagGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCT
EST: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAG GCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACGTGTCTGCTEST: gi|37994649|gb|CF806308.1|CF806308
genomic: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGgttggagttt ... tttgttgcagGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCT
EST: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAG GCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTEST: gi|151396530|gb|EV266407.1|EV266407
genomic: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGgttggagttt ... tttgttgcagGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCT
EST: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAG GCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTEST: gi|21638580|gb|BM139626.1|BM139626
genomic: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGgttggagttt ... tttgttgcagGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCT
EST: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAG GCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTEST: gi|151404289|gb|EV274099.1|EV274099
genomic: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGgttggagttt ... tttgttgcagGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCT
EST: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAG GCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTEST: gi|254340298|gb|GR858423.1|GR858423
genomic: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGgttggagttt ... tttgttgcagGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCT
EST: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAG GCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTEST: gi|254335254|gb|GR846751.1|GR846751
genomic: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGgttggagttt ... tttgttgcagGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCT
EST: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAG GCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTEST: gi|16996929|gb|BM086301.1|BM086301
genomic: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGgttggagttt ... tttgttgcagGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCT
EST: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAG GCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCT
genomic: ATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGgttggagttt ... tttgttgcagGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCT
tcatcttaacttattagctagcagattaattatttagttttaacctttgttgcagGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTGGGCAAATATCTGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTG
ttttaac putative branch site (score: 2)
cctttgtt CT-rich tract
attaattatttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatggtgtttagttttgggattcatttgtttgatatacagctgaatcatcttaacttattagctagcagattaattatttagttttaacctttgttgcagGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTGGGCAAATATCTGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT