Sequence
atgc intronic sequence ATGC exonic sequencegtaacacatataattagaactgtttaatcaagataaattcagataatctagcaggattacaatgttgttcatttattttcaagGAACACGCTGAAGGGTATCATGAATTGTCTGCAAAGACAAAAACATTCTTTTCTACAGCAGTTGCAAAATGGGATGCTGAGTTCTATGTCAAAGTGGATG
Basic information
species | Glycine max |
transcript | GLYMA14G33700.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G33700.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os09g27950.1 (Oryza sativa), 3'ss of exon 6
---------------------------------------------gtaacacatataattagaactgtttaatcaagataaattcagataatctagc---aggattacaatgttgt--tcatttattt-tcaagGAACACGCTGAAGGGTATCATGAATTGTCTGCAAAGACAAAAACATTCTTTTCTACAGCAGTTGCAAAATGGGATGCTGAGTTCTATGTCAAAGTGGATG
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gtatggtgacatccaccaaaagtagaagcacatcattctttacctatttctgttaaaccaaaatctgttttactgtgattggggctg-tagtccatactaatgtttattctgctgcaaccacacatgtatgtagGACCATGTTGAAGGGTATCACGAGCTATCTGCAAAGACCAAGATATTCTTTTCCACTGCTGTGGCATTATGGGATGCTGATTTCTATGTCAAGGTGGATG
upper sequence: GLYMA14G33700.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ30358 (Selaginella moellendorffii), 3'ss of exon 6
gtaacacatataattagaactgtttaatcaagataaattcagataatctagcaggattacaatgttgttcatttatt--ttcaagGAACACGCTGAAGGGTATCATGAATTGTCTGCAAAGACAAAAACATTCTTTTCTACAGCAGTTGCAAAATGGGATGCTGAGTTCTATGTCAAAGTGGATG
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---------gtaat-agaaacgctttctatgtctttcctctttcaatgtactgaaacgtagtttctccttgtctgctggcgcaagGACCATATTGAAGGCTACATGGAGCTGTCGGCAAAAACGAAGATCTACTTTTCTACAGCTGTTGCTAAATGGGATGCGGAATTCTACGTCAAAGTCGACG
upper sequence: GLYMA14G33700.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ28470 (Selaginella moellendorffii), 3'ss of exon 6
gtaacacatataattagaactgtttaatcaagataaattcagataatctagcaggattacaatgttgttcatttatt--ttcaagGAACACGCTGAAGGGTATCATGAATTGTCTGCAAAGACAAAAACATTCTTTTCTACAGCAGTTGCAAAATGGGATGCTGAGTTCTATGTCAAAGTGGATG
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---------gtaat-agaaacgctttctatgtctttcctctttcaatgtactgaaacgtagtttctccttgtctgctggcgcaagGACCATATTGAAGGCTACATGGAGCTGTCCGCAAAAACGAAGATCTACTTTTCTACAGCTGTTGCTAAATGGGATGCGGAATTCTACGTCAAAGTCGACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208142940|gb|GD941524.1|GD941524EST: ATCGAGCTATTGATTCAGAAGAAGCCCAGCACAAAGACTTCCTTCGCCTG GAACACGCTGAAGGGTATCATGAATTGTCTGCAAAGACAAAAACATTCTTT
genomic: ATCGAGCTATTGATTCAGAAGAAGCCCAGCACAAAGACTTCCTTCGCCTGgtaacacata ... tattttcaagGAACACGCTGAAGGGTATCATGAATTGTCTGCAAAGACAAAAACATTCTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caagataaattcagataatctagcaggattacaatgttgttcatttattttcaagGAACACGCTGAAGGGTATCATGAATTGTCTGCAAAGACAAAAACATTCTTTTCTACAGCAGTTGCAAAATGGGATGCTGAGTTCTATGTCAAAGTGGATG
tttattttc CT-rich tract
ttgttcatttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacacatataattagaactgtttaatcaagataaattcagataatctagcaggattacaatgttgttcatttattttcaagGAACACGCTGAAGGGTATCATGAATTGTCTGCAAAGACAAAAACATTCTTTTCTACAGCAGTTGCAAAATGGGATGCTGAGTTCTATGTCAAAGTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA