Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttaactgtttccactaccatgtgtccactatccatgaagaaaattgtgtgttgagatttggttctaaactgatatggagcttttcttccagGTTACAACATCAATATACAATCTCATATTGGGAAAGCTGTATTGTGATCATTATGGTACAATGCGTATACAGGGAAATCAAGACTACTCATGTAAACTGA

Basic information

species Glycine max
transcript GLYMA14G33410.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G33410.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S18_231V6.1 (Physcomitrella patens), 3'ss of exon 7
----gtatatttaactgtttccactaccatgtgtcca---ctatccatgaagaaaattgtgtgttgagatttggttctaaactgatatggagcttttcttccagGTTACAACATCAATATACAATCTCATATTGGGAAAGCTGTATTGTGATCATTATGGTACAATGCGTATACAGGGAAATCAAGACTACTCATGTAAACTGA
    || | || |  |   |   |   ||| |    |   ||   ||| |  ||||||   | ||        |||||| ||   ||||    | |||    |||| |||||||||||||||||| | || || || |||||||||   || ||||||||||||||||| |||||||| || |  || |||||    ||| |||
ggatgtgttttgacatacatgtgcattcatattagaagatcttctcattattaaaatttcatattccttacctgttctagacacttatgataatgttc----agGTCACAACATCAATATACAATTTGATTTTAGGGAAGCTGTATGTGGACCATTATGGTACAATGCGCATACAGGGCAACCGGGAGTACTCGATAAAATTGA

upper sequence: GLYMA14G33410.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ15167 (Selaginella moellendorffii), 3'ss of exon 6
gtatatttaactgtttccactaccatgtgtccactatccatgaagaaaattgtgtgttgagatttggttctaaactgatatggagcttttcttc-cagGTTACAACATCAATATACAATCTCATATTGGGAAAGCTGTATTGTGATCATTATGGTACAATGCGTATACAGGGAAATCAAGACTACTCATGTAAACTGA
                                                     ||  |   |   |  | |  | || | |    |  | |||  ||||| || |||||||| |||||||||||| | |||||||| || |||||||| || || |||||||| || || ||||| |  |||   || || || || |
-----------------------------------------------------gtagttcaaacggcatttggattggtctaacaccgtacttgacagGTGACCACATCAATTTACAATCTCATACTAGGAAAGCTTTACTGTGATCACTACGGCACAATGCGCATTCAAGGAAACCGCGACATGTCCTGCAAGCTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21285611|gb|BQ473482.1|BQ473482
EST:     GCATTTTGACTTTGGAATTTGATGATGGTGAAGTATGCCAGTGGAGTAAG                         GTTACAACATCAATATACAATCTCATATTGGGAAAGCTGTATTGTGATCAT
genomic: GCATTTTGACTTTGGAATTTGATGATGGTGAAGTATGCCAGTGGAGTAAGgtatatttaa ... tttcttccagGTTACAACATCAATATACAATCTCATATTGGGAAAGCTGTATTGTGATCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaaaattgtgtgttgagatttggttctaaactgatatggagcttttcttccagGTTACAACATCAATATACAATCTCATATTGGGAAAGCTGTATTGTGATCATTATGGTACAATGCGTATACAGGGAAATCAAGACTACTCATGTAAACTGA
                                           cttttcttcc  CT-rich tract
                         ttctaaa  TA-rich tract