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...tccttgtctggtcatatgataaattttctcctacagttccatttgaatacattttggaaataagattggtatcttgaattaattttttttattttggcagCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGAGAATCGAGAATGCTGGTGGTGTTGTCATGTGGGCAG
species | Glycine max |
transcript | GLYMA14G31890.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTAGCAAATGTTGGAGATTCTAGGACTATAATATCAAAAGNCTGGTAAAG CAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGEST: gi|254347036|gb|GR856706.1|GR856706
genomic: GTAGCAAATGTTGGAGATTCTAGGACTATAATATCAAAAG-CTGGTAAAGgtactaatta ... attttggcagCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAG
EST: TGTAGCAAATGTTGGAGATTCTAGGACTAT-ATATCAAAAGCTGGTAAAG CAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGAEST: gi|14011351|gb|BG726273.1|BG726273
genomic: TGTAGCAAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGTAAAGgtactaatta ... attttggcagCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGA
EST: TGTAGCAAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGTAAAG CAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGAEST: gi|19348049|gb|BM892581.1|BM892581
genomic: TGTAGCAAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGTAAAGgtactaatta ... attttggcagCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGA
EST: CAAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGTAAAG CAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGAEST: gi|7588767|gb|AW704555.1|AW704555
genomic: CAAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGTAAAGgtactaatta ... attttggcagCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGA
EST: TGTAGCAAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGTAAAG CAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGAEST: gi|15337173|gb|BI497829.1|BI497829
genomic: TGTAGCAAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGTAAAGgtactaatta ... attttggcagCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGA
EST: TGTAGCAAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGTAAAG CAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGAEST: gi|16344154|gb|BI969749.1|BI969749
genomic: TGTAGCAAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGTAAAGgtactaatta ... attttggcagCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGA
EST: AGGACTATAATATCANNNGCTGGTAAAG CAAATGCTCNNNNNGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGA
genomic: AGGACTATAATATCAAAAGCTGGTAAAGgtactaatta ... attttggcagCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGA
aatacattttggaaataagattggtatcttgaattaattttttttattttggcagCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGAGAATCGAGAATGCTGGTGGTGTTGTCATGTGGGCAG
aattaat putative branch site (score: 3)
ttttttttatttt CT-rich tract
aaataagattggtatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttgtctggtcatatgataaattttctcctacagttccatttgaatacattttggaaataagattggtatcttgaattaattttttttattttggcagCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGAGAATCGAGAATGCTGGTGGTGTTGTCATGTGGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
-ccttgtc
- - - - - - - - - - - - - -ctcctac
- - - - - - - - - - - - - - - - - - - ccatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaataa