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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataagttttttccaagtgttgttagaatcctaaatttgttggtttgtttagtgtttggttccttctatttctagGTGGATGCCCTAAAGACTGAATTGGAGAAATTTTATGGAAAGAACCCATTGGAATCAAAAGATTTGTCCCGTATTGTGAACTCCAACCACTTTAATCGCT

Basic information

species Glycine max
transcript GLYMA14G24140.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G24140.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G44170.3 (Arabidopsis thaliana), 3'ss of exon 6
gtaataagttttttccaagtgttgttagaatcctaaatttgttggtttgtttagtgtttggttccttctatttctagGTGGATGCCCTAAAGACTGAATTGGAGAAATTTTATGGAAAGAACCCATTGGAATCAAAAGATTTGTCCCGTATTGTGAACTCCAACCACTTTAATCGCT
    |||   ||    |  |    ||||| || | |     ||  | | |||    ||   ||   ||| | |  || | |||||| | |||  ||||||||||||||||||||| ||||||||  | || || |||||| |||| ||||| || ||||| || |||||| ||||||
---gtaa-cgttaagaacttaagattagattcttgatgaattttttgtatttgacattctcttttctct-tcttaagATTGATGCCATGAAGCTTGAATTGGAGAAATTTTATGGGAAGAACCCTATAGAGTCGAAAGATATGTCACGTATCGTAAACTCGAATCACTTTGATCGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttagaatcctaaatttgttggtttgtttagtgtttggttccttctatttctagGTGGATGCCCTAAAGACTGAATTGGAGAAATTTTATGGAAAGAACCCATTGGAATCAAAAGATTTGTCCCGTATTGTGAACTCCAACCACTTTAATCGCT
        tcctaaa  putative branch site (score: 2)
                                       ttccttctatttct  putative PPT
           taaatttgtt  TA-rich tract