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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatgaatataatctgtcccgttaggtattgtgctcgatgcaaaataaaagaattacaattatatgattgattaaaagaaaaagaaacctgtgttttcttatttggtggctcttcacttgttacagATTGTGATGGAACTTCCAATTGAACATGGCTTACTTTTGGACAATCTTTTGGATCTTGCACATGCCCCTTTTACGCACACCTCAACATTTGCTAAGGGAT

Basic information

species Glycine max
transcript GLYMA14G23860.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G23860.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G082527_T01 (Zea mays), 3'ss of exon 1
gtatgttatgaatataatctgtcccgttaggtattgtgctcgatgcaaaataaaagaattacaattatatgattgattaaaagaaaaagaaacctgtgttttcttatt-tggtg-gctcttca---cttgttacagATTGTGATGGAACTTCCAATTGAACATGGCTTACTTTTGGACAATCTTTTGGATCTTGCACATGCCCCTTTTACGCACACCTCAACATTTGCTAAGGGAT
                                            | ||||  |||    | | || ||    | |   ||  | |    |    ||| |||| || |   |||| | |||||    | |   |||||| ||||||||||| ||| ||||||||||  ||||  |||| || || ||||| ||||| ||||| |||||||| ||||| || || ||||||||||| |
--------------------------------------------gtaaaaggaaatc-ctgctatgatgcagtggcacaagtgtattgta---ttgtatttttttgtaacggtgtgttcttctgatcatccaacagATAGTGATGGAACTGCCAGTTGAACATGGACTACTCCTGGATAACCTCTTGGACCTTGCTCATGCTCCTTTTACACACACATCCACCTTTGCTAAGGGCT

upper sequence: GLYMA14G23860.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G038487_T01 (Zea mays), 3'ss of exon 6
gtatgttatgaatataatctgtcccgttaggtattgtgctcgatgcaaaataaaagaattacaattatatgattgattaaaagaaaaaga--aacctgtgttttcttatt-tggtg-gctcttcacttgttacagATTGTGATGGAACTTCCAATTGAACATGGCTTACTTTTGGACAATCTTTTGGATCTTGCACATGCCCCTTTTACGCACACCTCAACATTTGCTAAGGGAT
                                            | ||||  |||    | | || ||    | |   ||  | |           ||| || | || |   |||| | |||   | |   |||||| ||||||||||| ||| ||||||||||  ||||  |||| || || ||||| ||||| ||||| |||||||| ||||| || || ||||| ||||| |
--------------------------------------------gtaaaaggaaatc-ctgctatgatgcagtggcaaaagtgtattgtgttgtattgtattgtattgtaacggtgtgttctgatcatccaacagATAGTGATGGAACTGCCAGTTGAACATGGACTACTCCTGGATAACCTCTTGGACCTTGCTCATGCTCCTTTTACACACACATCCACCTTTGCCAAGGGCT

upper sequence: GLYMA14G23860.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv18s0001g02700.t01 (Vitis vinifera), 3'ss of exon 5
gtatgttatgaatataatctgtcccgttaggtattgtgctcgatgcaaaataaaagaattacaattatatgattgattaaaagaaaaagaaacctgtgttttcttatttggtggctcttcacttgttacagATTGTGATGGAACTTCCAATTGAACATGGCTTACTTTTGGACAATCTTTTGGATCTTGCACATGCCCCTTTTACGCACACCTCAACATTTGCTAAGGGAT
                              |||| ||  || ||||   ||  |    || |  || | ||| |  |||||||  |        | |  |   || | |  |   | ||      || |||||||| |||||||||||| | ||||||||  | ||| |||| || |||||||||||||||||||||||||| || || || || || ||||| || ||||
------------------------------gtat-gttatcaatgc---attcagatctttctgttgtttgaatacttaaaaggcatttttgg-tctcctcatttctatcattattttttgggaattgcagATTGTCATGGAACTTCCAGTGGAACATGGGCTTCTTCTGGATAACCTTTTGGATCTTGCACATGCCCCTTTCACTCATACATCCACCTTTGCCAAAGGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7029514|gb|AW459297.1|AW459297
EST:     CAACACTTCCATCTTTACTACCTCCTTCAGGATTTGAAATCCACGCTGAG                         ATTGTGATGGAACTTCCAATTGAACATGGCTTACTTTTGGACAATCTTTTG
genomic: CAACACTTCCATCTTTACTACCTCCTTCAGGATTTGAAATCCACGCTGAGgtatgttatg ... cttgttacagATTGTGATGGAACTTCCAATTGAACATGGCTTACTTTTGGACAATCTTTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaaagaaaaagaaacctgtgttttcttatttggtggctcttcacttgttacagATTGTGATGGAACTTCCAATTGAACATGGCTTACTTTTGGACAATCTTTTGGATCTTGCACATGCCCCTTTTACGCACACCTCAACATTTGCTAAGGGAT
                                      ctcttcactt  CT-rich tract
                      ttttcttattt  TA-rich tract