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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attattatgaaatgatttgcaagttagtggatgcatggttgtgtcattgactatgttgcttagctaaggcgtaacaactttttaccttgtatcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGTGATGCCAAATCTAGCAAAAAGGTTGAATAAGTCGAAGCCAGTTCAATAC

Basic information

species Glycine max
transcript GLYMA14G21190.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192334327|gb|FK025532.1|FK025532
EST:     TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG                         TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: gi|192297521|gb|FG992719.1|FG992719
EST:     TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG                         TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: gi|22928542|gb|BU545681.1|BU545681
EST:     TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG                         TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: gi|14008812|gb|BG725416.1|BG725416
EST:     TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG                         TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: gi|193550895|gb|FK509318.1|FK509318
EST:     TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG                         TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: gi|22928857|gb|BU545996.1|BU545996
EST:     TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG                         TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: gi|192301904|gb|FG995522.1|FG995522
EST:     TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG                         TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: gi|26058470|gb|CA801384.1|CA801384
EST:     TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG                         TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
EST: gi|7693245|gb|AW761340.1|AW761340
EST:     TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG                         TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGA
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGA
EST: gi|4287540|gb|AI441204.1|AI441204
EST:     TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAG                         TTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT
genomic: TTATTGGGTTTTTAGCTGCTCATTGCATATGGAATGGTGACGTCAAACAGgtttctttca ... atcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgactatgttgcttagctaaggcgtaacaactttttaccttgtatcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGTGATGCCAAATCTAGCAAAAAGGTTGAATAAGTCGAAGCCAGTTCAATAC
                       gcgtaac  putative branch site (score: 3)
                              aacttttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attattatgaaatgatttgcaagttagtggatgcatggttgtgtcattgactatgttgcttagctaaggcgtaacaactttttaccttgtatcaactcagTTATTGGAGTTTGACGAGTCCAAGACTGCCAAATCATCTCAAGAGGAGGGTGATGCCAAATCTAGCAAAAAGGTTGAATAAGTCGAAGCCAGTTCAATAC

- - - - - - - - -tgcaagt
- - - - - - - - - - - - - - - - gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct