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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgggaggtgtgataagattcctcctcatctggtgtattaaatataattgtatgatgttgaattctgtaattagatctattgactggtcaaaataaaaaatgtggtttgaattagtttcattctaagtgtagtgtgcttattgtgcggttttgcttttccatttagGTGATTGATTACAAAACACAGCAGGCTAGGCTCTTCCCTTTGCTGGCTTCTGCTTATGCTTTCAGATTTGTGGGTGGGTGGCTGAAATGGCTTTATATGG

Basic information

species Glycine max
transcript GLYMA14G14990.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03800.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os06g01390.1 (Oryza sativa), 3'ss of exon 7
gtaatgggaggtgtgataagattcctcctcatctggtgtattaaatataattgtatgatgttgaattctgtaattagatctattgactggtcaaaataaaaaatgtggtttgaattagtttcattctaagtgtagtgtgcttattgtgcggttttgcttttccatttagGTGATTGATTACAAAACACAGCAGGCTAGGCTCTTCCCTTTGCTGGCTTCTGCTTATGCTTTCAGATTTGTGGGTGGGTGGCTGAAATGGCTTTATATGG
                                                            || |  | |||| || | ||   | |  |    ||||  | ||    |||| | ||   ||   |   | ||    |||  || ||  |  |  || ||        ||||  |  ||||||| || |||||    || ||||| |||||||||||||| |||||||| || || |||||||||| ||||||||| ||||| || | ||
------------------------------------------------------------ttaatatttgtactttgttcatctaaaagaattaaattgataaacgagtttaactt---tttgctaccaatgacaagtggctaatggtctataatggttac------agGTCCTCAATTACAAGACTCAGCAAAGCAGACTCTTTCCTTTGCTGGCTTCAGCTTATGCATTTAGGTTTGTGGGTGAGTGGCTGAAGTGGCTGTACACGG

upper sequence: GLYMA11G03800.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM5G864319_T01 (Zea mays), 3'ss of exon 7
gtaatgggaggtgtgataagattcctcctcatctggtgtattaaatataattgtatgatgttgaattctgtaattagatctattgactgg--tcaaaataaaaaatgtggtttgaattagtttcattctaagtgtagtgtgcttattgtgcggttttgcttttccatttagGTGATTGATTACAAAACACAGCAGGCTAGGCTCTTCCCTTTGCTGGCTTCTGCTTATGCTTTCAGATTTGTGGGTGGGTGGCTGAAATGGCTTTATATGG
                                                             | || |        ||   ||    |||   | || ||  ||||||    |    |  ||| |   | ||  ||      | ||||   |    | | |         ||||  |||||||||| || || ||    || ||||| || ||||||||||| || ||||| || |||||||||||||  |||||||| ||||| || ||||
----------------------------------------------------------gaatcaactgcccgcccagtgttaccacctgtgcttaacatggaaaatgcatct---gtcggttaccaacaaaaggtgtctaacatatt---caagctggttac-------agGTCCTTGATTACAAGACTCAACAAAGCAGACTCTTTCCGTTGCTGGCTTCAGCATATGCATTTAGATTTGTGGGTGACTGGCTGAAGTGGCTATACATGG

upper sequence: GLYMA11G03800.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0389g00020.t01 (Vitis vinifera), 3'ss of exon 5
gtaatgggaggtgtgataagattcctcctcatctggtgtattaaatataattgtatgatgttgaattctgtaattagatctattgactggtcaaaataaaaaatgtggtttgaattagtttcattctaagtgtagtgtgcttattgtgcggttttgcttttccatttagGTGATTGATTACAAAACACAGCAGGCTAGGCTCTTCCCTTTGCTGGCTTCTGCTTATGCTTTCAGATTTGTGGGTGGGTGGCTGAAATGGCTTTATATGG
                                                              ||  |||    ||   |  | ||  |  ||||||| |||    |   ||   |||| |  |    |  |||| |      ||| |  |  ||| |||   | |||||||||||||||||||||| |||||   ||||||||| ||||||||||||||||| ||||||||||||||||| |||  |||| |||||||||| |||||||
------------------------------------------------------------gagatatctagggttttctgcagtggattttcaaaattaaa----tcacttc--ttagctctaaagaagatgtaattaatggattttctg--tttacttggtc-tttagGTGATTGATTACAAAACTCAGCAAAGTAGGCTCTTTCCTTTGCTGGCTTCTGCCTATGCTTTCAGATTTGTTGGTCAGTGGTTGAAATGGCTATATATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtttcattctaagtgtagtgtgcttattgtgcggttttgcttttccatttagGTGATTGATTACAAAACACAGCAGGCTAGGCTCTTCCCTTTGCTGGCTTCTGCTTATGCTTTCAGATTTGTGGGTGGGTGGCTGAAATGGCTTTATATGG
                                     ttttgcttttccattt  CT-rich tract
        attctaa  TA-rich tract