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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagtacttgatatctgggctaaaacgtgatttgagaatttatcttctaatcatgtcaatcattcaccccttttatagGAGACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGG

Basic information

species Glycine max
transcript GLYMA14G14400.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G14400.2 (Glycine max), 3'ss of exon 6
lower sequence: AT2G25480.1 (Arabidopsis thaliana), 3'ss of exon 7
--------------------------gtgagagtacttgatatctgggctaaaacgtgatttgagaatttatcttctaatcatgtcaatcattcaccccttttatagGAGACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGG
                           | | | |     ||   |    ||||  |||  |  |   |   |||||||    |    |||||         ||  |||| || |||||||| ||| |||||||||| |||||||||||||| || ||||| || || ||||| |  || || || || |||   |   ||||  | |
gttgtgttctatgccctcttgtttttcttaaaatgtcctattattcatttaaa--gtgtctatatgctcagtcttcta-ctgtaaatatcatctggaatacttgcagGAAACTCAAGAAGCTGAGCTTAAGATGCTAAGGAAGAGTCTGAACTTCAAAGCCACACCTATGCCTACCTTCTATCAAGAACCTCAGCTACCTAAAACAG

upper sequence: GLYMA14G14400.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv04s0008g05480.t01 (Vitis vinifera), 3'ss of exon 7
gtgagagtacttgatatctggg-ctaaaacgtgattt--gagaatttatctt-ctaatcatgtc----------------aatcattcaccccttttatagGAGACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGG
||   | || || ||  || |  | | || |  |||   |||| | ||  ||  || | | ||                 | |  |||     ||||| |||| || |||||||| |||||||||||||||||||||||| |||  ||||||||||| || |||||||| || || ||||| ||  | ||| |||| | ||
gttgtactattttatgcctagttccataatgcaattgtggagactctaatttgttagtaaagtttgttctttttctgacaagttcttctattgttttacagGAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAAGCAACGCCCATGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGG

upper sequence: GLYMA14G14400.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv11s0016g05460.t01 (Vitis vinifera), 3'ss of exon 7
gtgagagtacttgatatctgg-gctaaaacg-------tga-tttga------gaatttatcttctaatcatgtcaatcat----tcaccccttttatagGAGACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGG
||||||  | |   | | |   | |  || |       ||| |||||      || || | ||     |  ||   |   |    |||    || |||||||||| |||||||| ||||||||||||||  |||||||  | |||||||||||||| || |||||||| || ||||| || ||| | ||      || | 
gtgagaacattctgtgtttactgtttgaatggttttgttgactttgattcattgatttcagctgtcctttttggtgactttgagctcaaatgttctatagGAGACTCAAGAAGCAGAGATTAAGATGCTACGGAAGAGCTTAAATTTTAAAGCAACCCCTATGCCAAGCTTCTACCATGAACCTACACCCAAGGTGGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacgtgatttgagaatttatcttctaatcatgtcaatcattcaccccttttatagGAGACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGG
                     ttctaat  putative branch site (score: 2)
                                    tcattcacccctttt  putative PPT
             aatttatcttctaat  TA-rich tract