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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttatatattgtacaatggcctgttaaactttcttaccctttttattgtaacagaatatcttatttgaaatacttttctattttattatagGTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACTTGATGACAACAATCAATTTTCCACATCTCTTCTCACCTGGTTTTATA

Basic information

species Glycine max
transcript GLYMA14G14360.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405594|gb|EV275408.1|EV275408
EST:     GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG                         GTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTT
genomic: GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttat ... tttattatagGTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTT
EST: gi|254346686|gb|GR856408.1|GR856408
EST:     GTGGTGCAATG                         GTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT
genomic: GTGGTGCAATGgtaagcttat ... tttattatagGTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctttttattgtaacagaatatcttatttgaaatacttttctattttattatagGTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACTTGATGACAACAATCAATTTTCCACATCTCTTCTCACCTGGTTTTATA
         ttgtaac  putative branch site (score: 2)
                                    cttttctattttatt  putative PPT
                agaatatcttatttga  TA-rich tract