1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtaaaatatattgaagctcatttttaacatggttccttatcattgaaccctgttaaacaagctaagtgtagatgttgacaatttgttttgattatatcagGAAGGTCATGAGGAAGCTCAAGAAGAGTTGCCTAAAAAAGTTAAAACCTTCTTCAGTACTGCAGTTCAGAACTGGGATGCTGACTTTTATGTAAAAGTTG
species | Glycine max |
transcript | GLYMA14G14000.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTT GAAGGTCATGAGGAAGCTCAAGAAGAGTTGCCEST: gi|120533853|gb|EH261986.1|EH261986
genomic: ATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTgtaagcaaga ... attatatcagGAAGGTCATGAGGAAGCTCAAGAAGAGTTGCC
EST: ATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTT GAAGGTCATGAGGAAGCTCAAGAAGAGTTGCCTAAAAAAGTTAAAACCTTCEST: gi|26056275|gb|CA799189.1|CA799189
genomic: ATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTgtaagcaaga ... attatatcagGAAGGTCATGAGGAAGCTCAAGAAGAGTTGCCTAAAAAAGTTAAAACCTTC
EST: ATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTT GAAGGCCATGAGGAAGCTCAAGAAGAGTTGCGTAAAAAGGTTAAA
genomic: ATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTgtaagcaaga ... attatatcagGAAGGTCATGAGGAAGCTCAAGAAGAGTTGCCTAAAAAAGTTAAA
aaccctgttaaacaagctaagtgtagatgttgacaatttgttttgattatatcagGAAGGTCATGAGGAAGCTCAAGAAGAGTTGCCTAAAAAAGTTAAAACCTTCTTCAGTACTGCAGTTCAGAACTGGGATGCTGACTTTTATGTAAAAGTTG
aatttgttttgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatatattgaagctcatttttaacatggttccttatcattgaaccctgttaaacaagctaagtgtagatgttgacaatttgttttgattatatcagGAAGGTCATGAGGAAGCTCAAGAAGAGTTGCCTAAAAAAGTTAAAACCTTCTTCAGTACTGCAGTTCAGAACTGGGATGCTGACTTTTATGTAAAAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - -tggttcc
- - - - - - - - - - - - - - - - - - - - - - - -ccctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgac