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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgccaattatttgatcttttattctttctgttttagagttttataggctttcaataaaataattatcttttacagtttacagagataatctgttggtatagtattgattgatacttcaatgttccattagGTTCTTGGAAACAAGTTCCATAACAGATTACTTGAAATTATTGATGCAAG

Basic information

species Glycine max
transcript GLYMA14G07850.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07850.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G19650.2 (Arabidopsis thaliana), 3'ss of exon 5
gtgcgtgccaattatttgatcttttattctttctgttttagagttttataggctttcaataaaataattatcttttacagtttacagagataatctgttggtatagtattgattgatacttcaatgttcc-attagGTTCTTGGAAACAAGTTCCATAACAGATTACTTGAAATTATTGATGCAAG
                                                         ||   |    |  | |||     |  |     | | | | ||| ||||| | | |    || |    || ||  | ||||| ||||| ||||||| ||| |||| ||||||||| || |||||||||||
-------------------------------------------------------gtaacttagccgtggtttttatgcatccatttttacactttattg-tatagaactaaactgtattaatgtgatctgaatagGTCCTTGGGAACAAGTACCAGAACAAATTACTTGAGATGATTGATGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403337|gb|EV273147.1|EV273147
EST:     GGAACACGGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAAT                         GTTCTTGGAAACAAGTTCCATAACAGATTACTTGAAATTATTGATGCAAG
genomic: GGAACACGGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATgtgcgtgcca ... gttccattagGTTCTTGGAAACAAGTTCCATAACAGATTACTTGAAATTATTGATGCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacagagataatctgttggtatagtattgattgatacttcaatgttccattagGTTCTTGGAAACAAGTTCCATAACAGATTACTTGAAATTATTGATGCAAG
                                              ttccatt  CT-rich tract
                     tatagtatt  TA-rich tract