1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ataatgtttgtccttatttcactttctacatttcactttcctgaatcattataataagttttgcttataagtatgctcatgtagaatgtgtttcttgtagGATGTACAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCAAATACAATAAAGAAACTTGCTTCTCACAAACTTCAATCCACTCTAGCTG
species | Glycine max |
transcript | GLYMA14G07450.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAATGTTAAACCTGAAGGCAGTACTTGAAGCACACCGTTGCTTGAATAAG GATGTACAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCAEST: gi|15287259|gb|BI471150.1|BI471150
genomic: CAATGTTAAACCTGAAGGCAGTACTTGAAGCACACCGTTGCTTGAATAAGgtgaataaat ... tttcttgtagGATGTACAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCA
EST: CAATGTTAAACCTGAAGGCAGTACTTGAAGCACACCGTTGCTTGAATAAG GATGTACAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCAEST: gi|208135449|gb|GD937512.1|GD937512
genomic: CAATGTTAAACCTGAAGGCAGTACTTGAAGCACACCGTTGCTTGAATAAGgtgaataaat ... tttcttgtagGATGTACAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCA
EST: CAATGTTAAACCTGAAGGCAGTACTTGAAGCACACCGTTGCTTGAATAAG GATGTACAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCA
genomic: CAATGTTAAACCTGAAGGCAGTACTTGAAGCACACCGTTGCTTGAATAAGgtgaataaat ... tttcttgtagGATGTACAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCA
tcattataataagttttgcttataagtatgctcatgtagaatgtgtttcttgtagGATGTACAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCAAATACAATAAAGAAACTTGCTTCTCACAAACTTCAATCCACTCTAGCTG
tgtttctt CT-rich tract
ataataagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatgtttgtccttatttcactttctacatttcactttcctgaatcattataataagttttgcttataagtatgctcatgtagaatgtgtttcttgtagGATGTACAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCAAATACAATAAAGAAACTTGCTTCTCACAAACTTCAATCCACTCTAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - tgtttgt
- - - - - - - - - -cactttc
- - - - - - - - - - - - - - - - - - - tcctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgtg