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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcagtgagaaatctatagaaacggagcaacttttttttttttttttctggaagttgtaaagcatgaacatttattttttcttagtgattgtggtattatattaactgtgtagctacgtattgacacagGCTGCAATGAATGTAGGAGGGATAGTACTGAATGCTCTGGCTATCGAACACTTTATTCTTCGGCACCCATGTGAATCAAAACAT

Basic information

species Glycine max
transcript GLYMA14G07390.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07390.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0019g01510.t01 (Vitis vinifera), 3'ss of exon 6
-------------------------gtatgtcagtgaga--aatctatagaaacggagcaacttttttttttttttt-----tctggaa-------gttgtaaagcatgaacatttattttttcttagtgattgtggt-attatattaac-tgtgtagctac-gtattgacacagGCTGCAATGAATGTAGGAGGGATAGTACTGAATGCTCTGGCTATCGAACACTTTATTCTTCGGCACCCATGTGAATCAAAACAT
                           | |  |  || |  |  |  |||| |  ||||||||  |  |||   | |       | |||       ||  | || ||   |||  |  |   |  |  ||       | ||| |  |||| |  |  |  || || |||   |||||||   ||||||| || ||||| |||||||||||||||||||| || || |||||||| ||||||||||||||||||||||||
gtaagtcagaagtacattatcctaaagaagaaaaggaaaccagacattagacattgagcaactgatcatttagatctgtacacttagaataaactagtactgaaacactcacaactgatgacttcttctgtccaaactgattttgctaacctaagatgtcactgtcttggtccagGCTGTGCTGAATGTGGGTGGGATTGTACTGAATGCTCTGGCTATAGAGCATTTTATTCTCCGGCACCCATGTGAATCAAAACAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttcttagtgattgtggtattatattaactgtgtagctacgtattgacacagGCTGCAATGAATGTAGGAGGGATAGTACTGAATGCTCTGGCTATCGAACACTTTATTCTTCGGCACCCATGTGAATCAAAACAT
                    tattatattaactgt  TA-rich tract