1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...taagctgtatcattgaattaaagtggtcatgtcaaatttatattttagtacttaaattttctgaattcgtggatttaaccatgtatactgcactttgcagCATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCGGCGCATCAAAGTTTTTGACTTTTCTGCT
species | Glycine max |
transcript | GLYMA14G05430.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCAGAACTAAGACATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG CATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCGEST: gi|105633923|gb|DW247286.1|DW247286
genomic: GCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAGgtgagtttgt ... cactttgcagCATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCG
EST: GCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG CATAGAGCTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCGEST: gi|7042199|gb|AW472102.1|AW472102
genomic: GCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAGgtgagtttgt ... cactttgcagCATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCG
EST: GCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG CATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCGEST: gi|151403867|gb|EV273677.1|EV273677
genomic: GCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAGgtgagtttgt ... cactttgcagCATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCG
EST: GCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG CATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCG
genomic: GCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAGgtgagtttgt ... cactttgcagCATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCG
tagtacttaaattttctgaattcgtggatttaaccatgtatactgcactttgcagCATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCGGCGCATCAAAGTTTTTGACTTTTCTGCT
atttaac putative branch site (score: 3)
ttaaattttctgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagctgtatcattgaattaaagtggtcatgtcaaatttatattttagtacttaaattttctgaattcgtggatttaaccatgtatactgcactttgcagCATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCGGCGCATCAAAGTTTTTGACTTTTCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA