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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtgttaaaagattatgtttttacatcagaatgttaaatctattattattcctatttgatgtattttgttctgttgcagGCTCAAATCTTCTTATAGACAATGAAGGAAATCTTAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGACCAAAATGCAAATCTTACTAATCG

Basic information

species Glycine max
transcript GLYMA14G04410.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G04410.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os05g32360.1 (Oryza sativa), 3'ss of exon 6
--------gtctgtgttaaaagattatgtttttacatcagaatgttaaatctattattattcctat-ttgatgtattt-----------tgttctgttgcagGCTCAAATCTTCTTATAGACAATGAAGGAAATCTTAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGACCAAAATGCAAATCTTACTAATCG
          ||  | |     |   | | || |  ||| | || | |   | || |  ||  |||  | |  ||||            | | || ||||||| || |||||  | |||||||||||||| ||  | ||||| || |||||||| || ||| |||||||||| ||||| || || | |||||| ||||||||
gtatacaacactaagcttcgttacattttattcatctcatagtgatcatgattttgtggtttttatgctaaaatattcctgattcaaaatctactcttgcagGATCCAATCTCTTGATAGACAATGAAGGTAACTTGAAGCTGGCTGATTTTGGCCTAGCAAGATCATTTTCAAATGATCATAACGGAAATCTCACTAATCG

upper sequence: GLYMA14G04410.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0009g01800.t01 (Vitis vinifera), 3'ss of exon 7
gtctgtgttaaaagattatgtttttacatcagaatgttaaatctattattattcctat-ttgatgtattttgttctgttgcagGCTCAAATCTTCTTATAGACAATGAAGGAAATCTTAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGACCAAAATGCAAATCTTACTAATCG
||      ||| | |   | ||||   ||  || | |    | ||||| |    |||   | |  | || | |  |  | ||||||| |||||||| ||||||||||| |||||| | ||||||||||||||||| || || || |||||||| ||||| || ||||  |||||||| |||||
gttataactaagacaa-gttttttgttatttgattttcttttttattaatgaggctaagctaagctgttctatatttgtacagGCTCTAATCTTCTAATAGACAATGAGGGAAATTTGAAGCTTGCAGATTTTGGCCTTGCCCGGTCATTTTCAAATGATCACAATGGGAATCTTACAAATCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagaatgttaaatctattattattcctatttgatgtattttgttctgttgcagGCTCAAATCTTCTTATAGACAATGAAGGAAATCTTAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGACCAAAATGCAAATCTTACTAATCG
                             atttgat  putative branch site (score: 5)
                                       ttttgttct  putative PPT
         ttaaatctattattat  TA-rich tract