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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaggatctttacatatttccactgtgatattttaagtattattgttccttgataactcagtttttgcaataatcaggtaacctgttattgtgctgcagGACAAAGGGTAATTGGAGAGCCTATTGCCTCTGGGTTAGCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGATTGCAGCAAA

Basic information

species Glycine max
transcript GLYMA14G04030.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G04030.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 3'ss of exon 6
aaaaggatctttacat---atttccactgtga-tattttaagtattattgttccttgataactcagtttttgcaataatcaggtaacctgttattgtgctgcagGACAAAGGGTAATTGGAGAGCCTATTGCCTCTGGGTTAGCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGATTGCAGCAAA
 |   ||| | |  |    | |||   ||  | |||| |  |   || || |  |   |  || | |    | | ||| ||   |   |  | |||  |||||||||| ||||| |||||||||||  | |  |||||||||| ||||||||| ||| |||| ||| ||||||||||    |  ||||||||
taggtgatatctgaactgaacttctgatgcaactattatctgatctaatgattttgagt--cttaatca--ggagtaaccattcacttttcttttgaactgcagGACAGAGGGTTATTGGAGAGCCAGTAGTTTCTGGGTTAGTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396320|gb|AI495317.1|AI495317
EST:     TGTAATGAGCATTGACGCAATGGAAGAAATTGCGAAAGCCCGGAAAGCAG                         GACAAAGGGTAATTGGAGAGCCTATTGCCTCTGGGTTAGCCCTTGATGAAT
genomic: TGTAATGAGCATTGACGCAATGGAAGAAATTGCGAAAGCCCGGAAAGCAGgtccattaat ... tgtgctgcagGACAAAGGGTAATTGGAGAGCCTATTGCCTCTGGGTTAGCCCTTGATGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttccttgataactcagtttttgcaataatcaggtaacctgttattgtgctgcagGACAAAGGGTAATTGGAGAGCCTATTGCCTCTGGGTTAGCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGATTGCAGCAAA
                        aataatca  TA-rich tract