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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcattctccttaatgcaagtatgatgtgaaagtaaggtagagaaactatatttctgtggttagtattacttttgcagtttggcttatgcctgtccatgtataaaatgtgagtcttgcatgcttagttgttgtatgcctaagttatctactccttattacctcatccagGGGGAACTGACATATGGGAAGATTGGAGAATGGCGTTTTGACAAGAGATATCATCTTTTGGGTCCTCCACCCAAAAACCTCCCCTTACCGCCTCCAGGAG

Basic information

species Glycine max
transcript GLYMA14G03930.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03930.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0009g03360.t01 (Vitis vinifera), 3'ss of exon 6
gtgagttcattctccttaatgcaagtatgatgtgaaagtaaggtagagaaactatatttctgtggttagtattacttttgcagtttggcttatgcctgtccatgtataaaatgtgagtcttgcatgcttagttgttgtatgcctaagttatctactccttattacctcatccagGGGGAACTGACATATGGGAAGATTGGAGAATGGCGTTTTGACAAGAGATATCATCTTTTGGGTCCTCCACCCAAAAACCTCCCCTTACCGCCTCCAGGAG
                                                                       |||||  ||| || | ||  |    | |   ||| |||  |   | ||||| ||  ||| || ||   ||  ||| |||| |     |  | |||   | ||||| || ||||||||||| |||||||||||||||||||||||||||||||    ||||   || |||||||| || || ||| || |||| ||||| || |
----------------------------------------------------------------------tttactagtgctgtcttgccaaactttctttttgtttaagtta-aattcttg-atcattatttatttcttgagtaatttatttcaagttggtaaccc--ttcagGGAGAGCTGACATATGGAAAGATTGGAGAATGGCGTTTTGACAAGAGATCATTTCTTAGTGGCCCTCCACCAAAGAATCTCACCCTACCTCCTCCTGGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcatgcttagttgttgtatgcctaagttatctactccttattacctcatccagGGGGAACTGACATATGGGAAGATTGGAGAATGGCGTTTTGACAAGAGATATCATCTTTTGGGTCCTCCACCCAAAAACCTCCCCTTACCGCCTCCAGGAG
                                   ctccttattacctc  CT-rich tract
                        taagttat  TA-rich tract