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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgacataattcaactgctcagtacttggtgggaactatggttgagaacttgtaaaaaggactaatatgttttcaaacagACGCTTATAATGGGAAACAGGGATGACATAGATGAAATGTCCTCTGGCAATGCTAGTGTGCTCACAACAGTGTTGAAATTGATTGATAAGTATGACCTGT

Basic information

species Glycine max
transcript GLYMA14G03300.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03300.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os01g69030.1 (Oryza sativa), 3'ss of exon 7
--------gtaagttgacataattcaactgctcagtacttggtgggaactatggttgaga----acttgtaaaaaggactaa----tatgttttcaaacagACGCTTATAATGGGAAACAGGGATGACATAGATGAAATGTCCTCTGGCAATGCTAGTGTGCTCACAACAGTGTTGAAATTGATTGATAAGTATGACCTGT
           |||  | | ||| |  |||  || | ||||         ||  || |      ||| |||   || | |||    |   ||||    ||||  || || ||||| |||||||||||||| ||||| |||||| |||||||||| || || ||||| || ||  ||||  |||| || |||||||| ||||
gtcacaaaagtagtatatacaatgcttctgaacatt-cttgtacaattgcataattcatgtattactagtacctagcaataaaatttgccttttgttgcagATTCTGATCATGGGGAACAGGGATGACATCGATGAGATGTCCGCTGGCAATGCAAGCGTCCTCACCACTGTCCTGAAGCTGATCGACAAGTATGATCTGT

upper sequence: GLYMA14G03300.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G140107_T01 (Zea mays), 3'ss of exon 7
---------------gtaagttgacataattcaactgctcagtacttggtgggaactatggt-tgagaacttgtaaaaaggactaatatgttttcaaacagACGCTTATAATGGGAAACAGGGATGACATAGATGAAATGTCCTCTGGCAATGCTAGTGTGCTCACAACAGTGTTGAAATTGATTGATAAGTATGACCTGT
                 |  |  |   ||   |   | || | || |  |   |      |  ||        |  || |||| | | |  || |   ||||| || || ||||||||||| |||||||| || || |||||  |||||||||| ||||| ||||| |||||  ||||  |||| || |||||||| ||||
ctccttatctctaacagacatatatgaaacctactggttctgaacatcattacagtagctgcatgtattgccatgtaatggac-attttccttgctttcagACTCTAATCATGGGAAACAGAGATGACATCGACGATATGTCTGCTGGCAATGCCAGTGTCCTCACCACAGTTCTGAAGCTGATAGACAAGTATGATCTGT

upper sequence: GLYMA14G03300.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv05s0029g01140.t01 (Vitis vinifera), 3'ss of exon 7
gtaagttgacataattcaactgctcagtacttgg-------tgggaactatggttgagaacttgtaaaaaggactaatatgttttcaaacagACGCTTATAATGGGAAACAGGGATGACATAGATGAAATGTCCTCTGGCAATGCTAGTGTGCTCACAACAGTGTTGAAATTGATTGATAAGTATGACCTGT
|||||| | | |  | | | | ||   |  ||         |   ||  ||  ||||   |||| || ||  || |||||  || || | |||| ||||||||||| ||||| ||||| || || || |||||   ||| ||||||||||| || ||||||||||||||| |||||||||||||||| || |
gtaagtaggc-ttgtgcgattacttgatttttttagtcacttaacaataataattgaagtcttgcaacaaa-acaaatattcttgcatatagACACTTATAATGGGGAACAGAGATGATATCGAGGAGATGTCTGGTGGAAATGCTAGTGTCCTGACAACAGTGTTGAAAATGATTGATAAGTATGATCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtgggaactatggttgagaacttgtaaaaaggactaatatgttttcaaacagACGCTTATAATGGGAAACAGGGATGACATAGATGAAATGTCCTCTGGCAATGCTAGTGTGCTCACAACAGTGTTGAAATTGATTGATAAGTATGACCTGT
                                  gactaat  putative branch site (score: 2)
                                          tgttttc  CT-rich tract
                                     taatatgttttcaaa  TA-rich tract