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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatctcttaattctctccaagacttatatataaagtgtatgttgagatgaatgataattaataatatatagttggttgatgatgcatgcatgcatgtagATAGCTGAACACGAGAAAGCACAACAACGGCAACAGGATATGATACCGGGAAATGTGTGCGAGTCAACCATACCTCCACAATCATATGACCGCAATTTCT

Basic information

species Glycine max
transcript GLYMA14G03100.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207806015|gb|GD779192.1|GD779192
EST:     GAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAG                         ATAGCTGAACACGAGAAAGCACAACAACGGCAACAGGATATGATACCGGGA
genomic: GAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAGgtgatctctt ... atgcatgtagATAGCTGAACACGAGAAAGCACAACAACGGCAACAGGATATGATACCGGGA
EST: gi|6964510|gb|AW433203.1|AW433203
EST:     GGGAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAG                         ATAGCTGAACACGAGAAAGCACAACAACGGCAACAGGATATGATACCGGGA
genomic: GGGAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAGgtgatctctt ... atgcatgtagATAGCTGAACACGAGAAAGCACAACAACGGCAACAGGATATGATACCGGGA
EST: gi|208046429|gb|GD849069.1|GD849069
EST:     GAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAG                         ATAGCTGAACACGAGAAAGCACAACAACGGCAACAGGATATGATACCGGGA
genomic: GAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAGgtgatctctt ... atgcatgtagATAGCTGAACACGAGAAAGCACAACAACGGCAACAGGATATGATACCGGGA
EST: gi|9984839|gb|BE658947.1|BE658947
EST:     GGGAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAG                         ATAGCTGAACACGAGAAAGCACAACAACGGCAACAGGATATGATACCGGGA
genomic: GGGAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAGgtgatctctt ... atgcatgtagATAGCTGAACACGAGAAAGCACAACAACGGCAACAGGATATGATACCGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgaatgataattaataatatatagttggttgatgatgcatgcatgcatgtagATAGCTGAACACGAGAAAGCACAACAACGGCAACAGGATATGATACCGGGAAATGTGTGCGAGTCAACCATACCTCCACAATCATATGACCGCAATTTCT
     aatgataattaataat  TA-rich tract