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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcgggtgatgtgcttgaaggatgataataagctgataagtgatagaagtctttttttttgtagtacatcgtgaacatatttcctctaaacctatattagatatgcagGCTTTAATTTTGATACAGAATATGGTGAAAAAGTATTACCGGGTTTCCTTGATTGTATAATTGGAATTCAACAAGGTGAATCAAAGTCTTTTCCTCTTGT

Basic information

species Glycine max
transcript GLYMA14G02220.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02220.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv19s0090g01210.t01 (Vitis vinifera), 3'ss of exon 6
-gtcgggtgatgtgcttgaaggatg-ataataagctgataagtgatagaagtctttttttttgtagtacatcgtgaacatatttcctctaaacctatattagatatgcagGCTTTAATTTTGATACAGAATATGGTGAAAAAGTATTACCGGGTTTCCTTGATTGTATAATTGGAATTCAACAAGGTGAATCAAAGTCTTTTCCTCTTGT
 |  || || |   | |  |  ||| || |     |  | | |    |  ||||   |     |      ||         || ||||    |   | ||   | |||||| ||| | |||||||||||| ||||||| |||||  | || || |||||||| |  |||||||| |||| |||||||||| ||||||| ||||| || ||
aggaggttgtttcacctccaaaatgcatcaatgattatttattctatggggtctagctcccaatgaagtgtc-------cgttacctcgttgc---tgttctttttgcagGTTTTCACTTTGATACAGAAGATGGTGATAAAGTCCTTCCAGGCTTCCTTGACTCAATAATTGGCATTCGACAAGGTGAAACAAAGTCCTTTCCACTAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9898860|gb|BE607828.1|BE607828
EST:     TGATCAAGATGAATCAAATGTTAAAAGTATTCCTTCTGCTGAAAGTAAAG                         GCTTTAATTTTGATACAGAATATGGTGAAAAAGTATTACCGGGTTTCCTTG
genomic: TGATCAAGATGAATCAAATGTTAAAAGTATTCCTTCTGCTGAAAGTAAAGgtcgggtgat ... agatatgcagGCTTTAATTTTGATACAGAATATGGTGAAAAAGTATTACCGGGTTTCCTTG
EST: gi|17519655|gb|BM188697.1|BM188697
EST:     TGATCAAGATGAATCAAATGTTAAAAGTATTCCTTCTGCTGAAAGTAAAG                         GCTTTAATTTTGATACAGAATATGGTGAAAAAGTATTACCGGGTTTCCTTG
genomic: TGATCAAGATGAATCAAATGTTAAAAGTATTCCTTCTGCTGAAAGTAAAGgtcgggtgat ... agatatgcagGCTTTAATTTTGATACAGAATATGGTGAAAAAGTATTACCGGGTTTCCTTG
EST: gi|151410964|gb|EV280779.1|EV280779
EST:     TGATCAAGATGAATCAAATGTTAAAAGTATTCCTTCTGCTGAAAGTAAAG                         GCTTTAATTTTGATACAGAATATGGTGAAAAAGTATTACCGGGTTTCCTTG
genomic: TGATCAAGATGAATCAAATGTTAAAAGTATTCCTTCTGCTGAAAGTAAAGgtcgggtgat ... agatatgcagGCTTTAATTTTGATACAGAATATGGTGAAAAAGTATTACCGGGTTTCCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttgtagtacatcgtgaacatatttcctctaaacctatattagatatgcagGCTTTAATTTTGATACAGAATATGGTGAAAAAGTATTACCGGGTTTCCTTGATTGTATAATTGGAATTCAACAAGGTGAATCAAAGTCTTTTCCTCTTGT
                              ctctaaa  putative branch site (score: 3)
                                       tatattagatat  TA-rich tract