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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccctttcttgttatttatggtctttatcaatcatcccatcttccccgttaatctggaacttccaaattcgatttttttttttttattaaaagttgaatcatcacgataattgcttcgatgcagATACGGGGTATGCATACTCTGATACGTGATTCTCAAACAACGAAACATGACTTTGTATTTTATTCTGACCGTTTGATTCGTTTG

Basic information

species Glycine max
transcript GLYMA14G01480.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G01480.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 8
---------------------------------------------gtacccctttcttgttatttatggtcttta---tcaa---tcatcccatcttccccgttaatctg---gaacttccaaattcgat------ttttttttttttattaaaagttgaatcatcacga-----------taattgcttcgatgcagATACGGGGTATGCATACTCTGATACGTGATTCTCAAACAACGAAACATGACTTTGTATTTTATTCTGACCGTTTGATTCGTTTG
                                             ||   ||| | |   |   | || | || |    |||   ||||  |||  |    || |        || |||    |||||||      |||| |||   |||| ||  |  ||   |||              || ||| || ||| |||||||||||||||||||| || ||||||||| |||||||||| || ||||| ||||| |||||| ||||||| ||||||||||||
gtatatcagctcttcctatttgctattattatttactgtgggtgtgtgtgcctgtgtgtgtgcgtgtgtttttaaattccaaatttcatgtcattgtaaatgtaaggtcacatgatcttgtggattcgatattcagttttatttgcctattgaagttccaaatttcatatgattgaagctttatttgatttgatccagATACGGGGTATGCATACACTTATACGTGATGCTCAAACAACAAAGCATGATTTTGTCTTTTATGCTGACCGGTTGATTCGTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatttttttttttttattaaaagttgaatcatcacgataattgcttcgatgcagATACGGGGTATGCATACTCTGATACGTGATTCTCAAACAACGAAACATGACTTTGTATTTTATTCTGACCGTTTGATTCGTTTG
                                         ttgcttc  CT-rich tract
     tttttttttttattaa  TA-rich tract