1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcatcaaaactctgtattcatacattcacaatattcctattatccataaattctgcatcataagttcattcattgacattgtgtttctggtctcttgcagGGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTGCTTCCAATTGTAGGCAATGCTGCAGAACATGCCAGTGCTATCATGTTTG
species | Glycine max |
transcript | GLYMA13G44960.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAG GGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTGEST: gi|298184786|gb|HO029999.1|HO029999
genomic: ACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAGgtatagctat ... tctcttgcagGGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTG
EST: TGACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAG GGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTGEST: gi|192328536|gb|FK020768.1|FK020768
genomic: TGACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAGgtatagctat ... tctcttgcagGGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTG
EST: TGACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAG GGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTG
genomic: TGACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAGgtatagctat ... tctcttgcagGGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTG
ataaattctgcatcataagttcattcattgacattgtgtttctggtctcttgcagGGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTGCTTCCAATTGTAGGCAATGCTGCAGAACATGCCAGTGCTATCATGTTTG
cattgac putative branch site (score: 3)
tctcttgc putative PPT
atcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatcaaaactctgtattcatacattcacaatattcctattatccataaattctgcatcataagttcattcattgacattgtgtttctggtctcttgcagGGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTGCTTCCAATTGTAGGCAATGCTGCAGAACATGCCAGTGCTATCATGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - -ctctgta
- - - - - - - - - - - cattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - ctgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttctg