1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tggaaataatgctagtagtagttgggcaacttcagaaaatttggtttattagcatgcctttggcttgttgtttttgatgaagttgtgtgccaattgacagAAGCAAAATGTTGAGGAGGGGCAAGTGATTTGTTATATTGAACAGCTTGGTGGTGAGCTGCCAATTGAG
species | Glycine max |
transcript | GLYMA13G44040.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAGATCACGGACGATAAAGGGGAAGCGTGCTCCACCATCATGTAAAGAG AAGCAAAATGTTGAGGAGGGGCAAGTGATTTGTTATATTGAACAGCTTGGTEST: gi|58016331|gb|CX703073.1|CX703073
genomic: GGAGATCACGGACGATAAAGGGGAAGCGTGCTCCACCATCATGTAAAGAGgtacagttgt ... caattgacagAAGCAAAATGTTGAGGAGGGGCAAGTGATTTGTTATATTGAACAGCTTGGT
EST: GGAGATCACGGACGATAAAGGGGAAGCGTGCTCCACCATCATGTAAAGAG AAGCAAAATGTTGAGGAGGGGCAAGTGATTTGTTATATTGAACAGCTTGGTEST: gi|213591272|gb|DB983014.1|DB983014
genomic: GGAGATCACGGACGATAAAGGGGAAGCGTGCTCCACCATCATGTAAAGAGgtacagttgt ... caattgacagAAGCAAAATGTTGAGGAGGGGCAAGTGATTTGTTATATTGAACAGCTTGGT
EST: GAGATCAGC-GACGATAAAGGGGAAGCGTGCTCCACCATCATGTAAAGAG AAGCAAAATGTTGAGGAGGGGCAAGTGATTTGTTATATTGAACAGCTTGGT
genomic: GAGATCA-CGGACGATAAAGGGGAAGCGTGCTCCACCATCATGTAAAGAGgtacagttgt ... caattgacagAAGCAAAATGTTGAGGAGGGGCAAGTGATTTGTTATATTGAACAGCTTGGT
ttattagcatgcctttggcttgttgtttttgatgaagttgtgtgccaattgacagAAGCAAAATGTTGAGGAGGGGCAAGTGATTTGTTATATTGAACAGCTTGGTGGTGAGCTGCCAATTGAG
ttttgat putative branch site (score: 4)
ttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaaataatgctagtagtagttgggcaacttcagaaaatttggtttattagcatgcctttggcttgttgtttttgatgaagttgtgtgccaattgacagAAGCAAAATGTTGAGGAGGGGCAAGTGATTTGTTATATTGAACAGCTTGGTGGTGAGCTGCCAATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - -aatgcta
- - - - - - - - - - - - - caacttc
- - - - - - - - - - - - - - - - - - - - - - - - - - catgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgc