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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtcaaaacattctttgcacctactctttttaaattaaatcatcactgtgtaacctaaaacttttacagtcataaaaaaaaagtctaactagcttattgggtattattcatcagGGTTTGATGTGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTAGATACCTCGGCAGCACACATTGCTAACTTGTTGTCAACAGAGCCAGC

Basic information

species Glycine max
transcript GLYMA13G43990.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43990.2 (Glycine max), 3'ss of exon 5
lower sequence: AT1G52700.1 (Arabidopsis thaliana), 3'ss of exon 4
gtacgtcaaaacattctttgcacctactctttttaaattaaatcatcactgtgtaacctaaaacttttacagtcataaaaaaaaagtctaactagcttattgggtattat-tcatcagGGTTTGATGTGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTAGATACCTCGGCAGCACACATTGCTAACTTGTTGTCAACAGAGCCAGC
    || | | || |  |  ||  |      || ||    ||||||  || |||   ||        || ||| |||  | |||       ||   |||  ||   |||  | |||||||||||| || || ||| |||| ||||||||||  ||||||| ||| ||||||||| |||| ||  |||| ||||||||| | |||||  | || |||||
----gtaagatcagttctctcatttgaaaacttcaag---aatcatt-ctttgttgtct-------ctaaagtaatactagaaa-------ctgaattaacggtagttacgtaatcagGGTTTGACGTTGGGGAAATTTCTGAAGATGGTCATGATGATTTGGAAGGTTTAGATGCCTCAGCTTCACATATTGCTAACCTTTTGTCCTCTGAACCAGC

upper sequence: GLYMA13G43990.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0002g06010.t01 (Vitis vinifera), 3'ss of exon 5
-------------------gtacgtcaaaacattctttgcacctactctttttaaattaaatcatcactgtg-taacctaaaactt-------ttacagtcataaaaaaaaagtctaactagcttattgggtattatt-------catcagGGTTTGATGTGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTAGATACCTCGGCAGCACACATTGCTAACTTGTTGTCAACAGAGCCAGC
                   |    |  |   |   ||   ||  | ||||||| |   |  |||   |  |  | ||    | |||       ||||  | |||     ||    |||| | | | |   ||  |  |        ||||||||||||||||||||| |||||||| ||||||||||| |||| ||| ||||||||| | || |||||||||||||| |||||||||||||| || || ||
gtaagattaatttccatttgcttttagatgaagggttgatactaattcttttttatccatctcaaagccataattacagccagcttcttttgcttactataatactgtgaattgataaccatcatctcaagtgcttatgtgatgatatcagGGTTTGATGTGGGAGAGCTTTCAGATGATGGTCCAGACGATTTGGATGGTTTAGATGCATCAGCAGCACACATTGCAAACTTGTTGTCAACTGAACCTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttttacagtcataaaaaaaaagtctaactagcttattgggtattattcatcagGGTTTGATGTGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTAGATACCTCGGCAGCACACATTGCTAACTTGTTGTCAACAGAGCCAGC
                       gtctaac  putative branch site (score: 2)
            ataaaaaaaaagtcta  TA-rich tract