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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccatgaacctattgatgtgcttatggatccgccacattattattaattgttgaaacattacttatattttatccaccttgatgtgcttgttaatagtgccactttaatttgatgttttgtgacatgcgttttcaacagGGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATCCCAGAG

Basic information

species Glycine max
transcript GLYMA13G41580.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323380|gb|FK017081.1|FK017081
EST:     GTTTGCACAATTTTCCAGAAGGAATGGCGGTGTTCCTTGGATCCTTAAAG                         GGCCTCCGTGTTGGTATCAACTTAGCATTAGCCATTGCTCTGCACAATATC
genomic: GTTTGCACAATTTTCCAGAAGGAATGGCGGTGTTCCTTGGATCCTTAAAGgtacccatga ... ttttcaacagGGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATC
EST: gi|7029691|gb|AW459474.1|AW459474
EST:     GCACAATTTTCCAGAAGGAATGGCGGTGTTCCTTGGATCCTTAAAG                         GGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATC
genomic: GCACAATTTTCCAGAAGGAATGGCGGTGTTCCTTGGATCCTTAAAGgtacccatga ... ttttcaacagGGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATC
EST: gi|192300198|gb|FG989320.1|FG989320
EST:     GTTTGCACAATTTTCCAGAAGGAATGGCGGTGTTCCTTGGATCCTTAAAG                         GGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATC
genomic: GTTTGCACAATTTTCCAGAAGGAATGGCGGTGTTCCTTGGATCCTTAAAGgtacccatga ... ttttcaacagGGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATC
EST: gi|192300847|gb|FG991169.1|FG991169
EST:     AATGGCGGTGTTCCCTTGGATCCTTAAAG                         GGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATC
genomic: AATGGCGGTGTT-CCTTGGATCCTTAAAGgtacccatga ... ttttcaacagGGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttgttaatagtgccactttaatttgatgttttgtgacatgcgttttcaacagGGCCTCCGTGTTGGCATCAACTTAGCATTAGCCATTGCTCTGCACAATATCCCAGAG
                                           cgttttc  CT-rich tract
                   tttaatttgatgtttt  TA-rich tract