1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgtctacctcctgtcatgcatcattgatcgaaagttctctctgcttatctgtccttgaaagactatatatctaatttgtaatggagtaattactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGCGAGTAGGAGCAAG
species | Glycine max |
transcript | GLYMA13G40960.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGEST: gi|151404362|gb|EV274172.1|EV274172
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttt ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
EST: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGEST: gi|213590294|gb|DB963857.1|DB963857
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttt ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
EST: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGEST: gi|19052776|gb|BM731443.1|BM731443
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttt ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
EST: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttt ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAG
tatctgtccttgaaagactatatatctaatttgtaatggagtaattactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGCGAGTAGGAGCAAG
atctaat putative branch site (score: 3)
ttacttt putative PPT
actatatatctaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtctacctcctgtcatgcatcattgatcgaaagttctctctgcttatctgtccttgaaagactatatatctaatttgtaatggagtaattactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGCGAGTAGGAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- -ctacctc
- - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - ctctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagac