Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcttccttcttattacttctaagaatattgataattgggatctttttttccttttttccattttcaatctgcatttatcattttgagctatcatgttccctgttggtttatattcccattgatgtattctttatctgcacaatgactcagaccccagtgatttcctttttcagATTGAAAAAACAGTGTTCGTTGTGTTTTTCTCTGGGGAACAAGCAAGAACCAAGATTCTGAAAATTTGTGAGGCATTTGGTGCAAATTGTTATCCTGTTC

Basic information

species Glycine max
transcript GLYMA13G40430.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40430.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 6
gttttcttccttcttattacttctaagaatattgataattgggatctttttttccttttttccattttcaatctgcatttatcattttgagctatcatgttccctgttggtttatattcccattgatgtattctttatctgcacaatgactcagaccccagtgatttccttttt-cagATTGAAAAAACAGTGTTCGTTGTGTTTTTCTCTGGGGAACAAGCAAGAACCAAGATTCTGAAAATTTGTGAGGCATTTGGTGCAAATTGTTATCCTGTTC
                                                                      | ||   | |||  || ||    ||    || | | |  |   | | | | |||||   ||| || |  |    ||||   | ||  ||| || |||  |  || |||||||| |||||||| ||||| ||||| ||||| ||||| || |||| ||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |
--------------------------------------------------------------------ttagctcagtctat-gttctggttcatttctttgcttttcag---aaacttctattga---atttttgagtta---aatggtactgattccactggttttatcgttgcagATTGAGAAAACAGTTTTCGTGGTGTTCTTCTCAGGGGAGCAGGCAAAAACAAAGATACTGAAAATTTGTGAAGCATTTGGTGCAAATTGCTATCCTGTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatgtattctttatctgcacaatgactcagaccccagtgatttcctttttcagATTGAAAAAACAGTGTTCGTTGTGTTTTTCTCTGGGGAACAAGCAAGAACCAAGATTCTGAAAATTTGTGAGGCATTTGGTGCAAATTGTTATCCTGTTC
 cattgat  putative branch site (score: 4)
                                       tgatttcctttttc  putative PPT
      tattctttat  TA-rich tract