1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatcaaattgatattacaaagattttttttcatgtttttattagatatttgtcaattagttctgatgaggttgatttttcctgatactttattattgcagGCAGCCATGGCTATTGGGAATACTTCAAACACTCCAATTACTGGACAACCTTATCAGTCTTCTGCTGCAATTTCTTCATCTTCAGTGCCAACTCATACTG
species | Glycine max |
transcript | GLYMA13G39120.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATCCATCCTTTGTAAACTTCTTCAGT GCAGCCATGGCTATTGGGAATACTTCAAACACTCCAATTACTGGACAACCTEST: gi|254320227|gb|GR829415.1|GR829415
genomic: GATCCATCCTTTGTAAACTTCTTCAGTgtatgtacca ... attattgcagGCAGCCATGGCTATTGGGAATACTTCAAACACTCCAATTACTGGACAACCT
EST: CCAATGTGGCTGATGTTCCTGATGATCCATCCTTTGTAAACTTCTTCAGT GCAGCCATGGCTATTGGGAATACTTCAAACACTCCAATTACTGGACAACCTEST: gi|208062092|gb|GD855872.1|GD855872
genomic: CCAATGTGGCTGATGTTCCTGATGATCCATCCTTTGTAAACTTCTTCAGTgtatgtacca ... attattgcagGCAGCCATGGCTATTGGGAATACTTCAAACACTCCAATTACTGGACAACCT
EST: ATGTTCCTGATGATCCATCCTTTGTAAACTTCTTCAGT GCAGCCATGGCTATTGGGAATACTTCAAACACTCCAATTACTGGACAACCTEST: gi|9902607|gb|BE611638.1|BE611638
genomic: ATGTTCCTGATGATCCATCCTTTGTAAACTTCTTCAGTgtatgtacca ... attattgcagGCAGCCATGGCTATTGGGAATACTTCAAACACTCCAATTACTGGACAACCT
EST: TCCATCCTTTGTAAACTTCTTCAGT GCAGCCATGGCTATTGGGAATACTTCAAACACTCCAATTACTGGACAACCTEST: gi|151408519|gb|EV278327.1|EV278327
genomic: TCCATCCTTTGTAAACTTCTTCAGTgtatgtacca ... attattgcagGCAGCCATGGCTATTGGGAATACTTCAAACACTCCAATTACTGGACAACCT
EST: CCAATGTGGCTGATGTTCCTGATGATCCATCCTTTGTAAACTTCTTCAGT GCAGCCATGGCTATTGGGAATACTTCAA-CACTCCAATTACTGGACAACCTEST: gi|9819945|gb|BE555458.1|BE555458
genomic: CCAATGTGGCTGATGTTCCTGATGATCCATCCTTTGTAAACTTCTTCAGTgtatgtacca ... attattgcagGCAGCCATGGCTATTGGGAATACTTCAAACACTCCAATTACTGGACAACCT
EST: TCAATGTGGCTGATGTTCCTGATGATCCATCCTTTGTAAACTTCTTCAGT GCAGCCATGGCTATTGGGAATACTTCAAACACTCCAATTACTGGACAACCT
genomic: CCAATGTGGCTGATGTTCCTGATGATCCATCCTTTGTAAACTTCTTCAGTgtatgtacca ... attattgcagGCAGCCATGGCTATTGGGAATACTTCAAACACTCCAATTACTGGACAACCT
tatttgtcaattagttctgatgaggttgatttttcctgatactttattattgcagGCAGCCATGGCTATTGGGAATACTTCAAACACTCCAATTACTGGACAACCTTATCAGTCTTCTGCTGCAATTTCTTCATCTTCAGTGCCAACTCATACTG
tcctgat putative branch site (score: 3)
ctttatt CT-rich tract
tgatactttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcaaattgatattacaaagattttttttcatgtttttattagatatttgtcaattagttctgatgaggttgatttttcctgatactttattattgcagGCAGCCATGGCTATTGGGAATACTTCAAACACTCCAATTACTGGACAACCTTATCAGTCTTCTGCTGCAATTTCTTCATCTTCAGTGCCAACTCATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggttg