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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atactgatatgttattactatccttctttgaaattcaagatacccgttcttcttaacatgccatcagtgtcttacatagtttaattggttgttttgttagGCTTCTCAAGAAGAGGCCACAAAACAGAAGGATGCATTGGCTAGTGAAGTTACATCTCTCCGAGTAGAGTTGCAACAAGTGAGGGATGATCGAGACCGCC

Basic information

species Glycine max
transcript GLYMA13G36230.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208244240|gb|GE039415.1|GE039415
EST:     CTGTAGTGGAGACCCTTACCATGTTAAAGGGTCAGCTTACTTTGTCTATG                         GCTTCTCAAGAAGAGGCCACAAAACAGAAGGATGCATTGGCTAGT
genomic: CTGTAGTGGAGACCCTTACCATGTTAAAGGGTCAGCTTACTTTGTCTATGgtaagtttgc ... gttttgttagGCTTCTCAAGAAGAGGCCACAAAACAGAAGGATGCATTGGCTAGT
EST: gi|208208382|gb|GE004299.1|GE004299
EST:     CTGTAGTGGAGACCCTTACCATGTTAAAGGGTCAGCTTACTTTGTCTATG                         GCTTCCCAAGAAGAGGCCACAAAACAGAAGGATGCATTGGCTAGTGAAGTT
genomic: CTGTAGTGGAGACCCTTACCATGTTAAAGGGTCAGCTTACTTTGTCTATGgtaagtttgc ... gttttgttagGCTTCTCAAGAAGAGGCCACAAAACAGAAGGATGCATTGGCTAGTGAAGTT
EST: gi|207810436|gb|GD782470.1|GD782470
EST:     CTGTAGTGGAGACCCTTACCATGTTAAAGGGTCAGCTTACTTTGTCTATG                         GCTTCTCAAGAAGAGGCCACAAAACAGAAGGATGCATTGGCTAGTGAAGTT
genomic: CTGTAGTGGAGACCCTTACCATGTTAAAGGGTCAGCTTACTTTGTCTATGgtaagtttgc ... gttttgttagGCTTCTCAAGAAGAGGCCACAAAACAGAAGGATGCATTGGCTAGTGAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcttcttaacatgccatcagtgtcttacatagtttaattggttgttttgttagGCTTCTCAAGAAGAGGCCACAAAACAGAAGGATGCATTGGCTAGTGAAGTTACATCTCTCCGAGTAGAGTTGCAACAAGTGAGGGATGATCGAGACCGCC
                                           ttgtttt  CT-rich tract
                          ttacatagtttaatt  TA-rich tract