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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttaattaattagtaccactttttctctccctccccaaaagccatttttactcattttaagtttacttatttgatatgttaattttaaaagttacattcactagttttaaacagttgttatagctattcattggatggaagaatctgccacaaaaaaatatcaaatgtttgatattttttgttctattttcagATTCCTGAAGATCTCCGTTTTGTGCTTAGAATGAGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCTCAACTCTTCTCTTCAACAA

Basic information

species Glycine max
transcript GLYMA13G34980.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G34980.1 (Glycine max), 3'ss of exon 6
lower sequence: AT3G15240.2 (Arabidopsis thaliana), 3'ss of exon 6
gtgagttaattaattagtaccactttttctctccctccccaaaagccatttttactcattttaagtttacttatttgatatgttaattttaaaagttacattcactagttttaaacagttgttatagctattcattggatggaagaatctgccacaaaaaaatatcaaatgtttgatattttttgttctattttcagATTCCTGAAGATCTCCGTTTTGTGCTTAGAATGAGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCTCAACTCTTCTCTTCAACAA
                                                                                                          ||| ||    | ||    |     || |  |  || |||  |   |         || |     |||  || || | |   || |  |||||| ||||||||||| |  ||||| ||| | ||||| ||||| |||||||| |||||||||||||| || || ||||||||||| |||||||| ||||   
-------------------------------------------------------------------------------------------------------gtaagtcttttttattttggttcatggttaaaagattgtaagtcttctcttacttgggatctttgcggtt--atgttctctaaact-tactcagATACCTGAAGATCTGCACTTTGTTCTTCGGATGAGGCACACGTTTGAATCACTTGGCTACCAATCCGGATTTTACCTCTCTCAGCTCTTCTCCTCAAACC

upper sequence: GLYMA13G34980.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G53900.2 (Arabidopsis thaliana), 3'ss of exon 6
gtgagttaattaattagtaccactttttctctccctccccaaaagccatttttactcattttaagtttacttatttgatatgttaattttaaaagttacattcactagttttaaacagttgttatagctattcattggatggaagaatctgccacaaaaaaatatcaaatgtttgat-attttttgttctattt--tcagATTCCTGAAGATCTCCGTTTTGTGCTTAGAATGAGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCTCAACTCTTCTCTTCAACAA
                                                                                                              | |     || |  ||    |||||   || |     |  | | |    |         ||| |||| | |  ||||| | |||  ||||||||| |||||||| | ||||||||| || ||||| || |  ||||||||  |||| |||  ||| ||||| |||||||| || |||||||||||||   
-------------------------------------------------------------------------------------------------------------gtgagttctttctcttacggtttcatattatcgcttt-ttcgactcggttatgcggtgtgtgtgtgatcagtcgttgttttgtttcttcagATTCCAGAAGATCTTCATTTTGTGCTAAGGATGAGGCAAATGTTTGAATCAATTGGTTACAGATCAGGTTTTTACCTCTCACAGCTCTTCTCTTCAAACC

upper sequence: GLYMA13G34980.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv19s0014g02320.t01 (Vitis vinifera), 3'ss of exon 6
gtgagttaattaattagtaccactttttctctccctccccaaaagccatttttactcattttaagtttacttatttgatatgttaattttaaaagttacattcactagttttaaacagttgttatagctattcattggatggaagaatc--tgccacaaaaaaatatcaaatgtttgatattttttgttctattttcagATTCCTGAAGATCTCCGTTTTGTGCTTAGAATGAGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCTCAACTCTTCTCTTCAACAA
                                            |  | ||| | |  ||||   | | |||   | || | ||  |  |   ||| |   |   || |||| |    |||||  |  |||  ||  | | ||    |   | ||   |||  |  | |  |  |||| |||      | |||  |||||| || ||||| || | ||||||||| |||||| | || || |||||||| ||||| || |||||||| ||||||||||| || |||||||||||||| |
--------------------------------------------gtgagtttcatttgtttt---tgtgctttgatcatctcttg-tcctgctagtaattcttgatatttttcagattttgttg-atatatgtatgcgtttgagcctttgtttccttgaaaggagttgatctcattgagatt-----atgtatgctcagATACCGGAAGACCTTCATTTTGTGCTGAGAATGCGGCATACCTTTGAATCTCTTGGGTATCAATCTGGGTTCTACCTCTCCCAGCTCTTCTCTTCAACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaatctgccacaaaaaaatatcaaatgtttgatattttttgttctattttcagATTCCTGAAGATCTCCGTTTTGTGCTTAGAATGAGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCTCAACTCTTCTCTTCAACAA
                            gtttgat  putative branch site (score: 5)
                                    ttttttgttctatttt  CT-rich tract
             aaaaaaatatcaaatg  TA-rich tract