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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagataccaatttacttgagatttggatagatctttatatatccgatatggaagcaataaatacattctgaattctactcatgctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCTCATGCCCGTACATTTTCTCTGATCAATGGTTACTCCGCTCCCTTAGAGG

Basic information

species Glycine max
transcript GLYMA13G34570.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G34570.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0014g01410.t01 (Vitis vinifera), 3'ss of exon 6
gtaagataccaatttacttgagatttggatagatctttatatatccgatatggaagcaata-aatacattctgaa---ttctactcatgctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCTCATGCCCGTACATTTTCTCTGATCAATGGTTACTCCGCTCCCTTAGAGG
          |  |||    | |||   |||  |   | ||   |   |    ||  | |      |||| | ||   ||||   | |||    ||||| | ||||||    | ||||||||||||||| |||||||  ||| |||||||||||| |||||||||||  || |||||||||| || ||||| || ||| 
-------gtgagcttatcccatattcctataatttgctctaagccatttcaataaatattctggctcattgtcaaacattctttgcttgcctg-tgcagATAGCCAAATGCCTAAGACCAGTGGTTCTTGGCCTTATCTTATGTGCCTCTCATGCGCGTACATTTTCAATGCTCAATGGTTATTCTGCTCCTTTGGAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208258962|gb|GE055395.1|GE055395
EST:     TCTTTTCCGTAGACAAATATAATCCATATGATCGCTCTATAATAGTGACA                         GTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
genomic: TCTTTTCCGTAG-CAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagatacc ... ctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
EST: gi|19938576|gb|BQ081785.1|BQ081785
EST:     ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACA                         GTTGCCAAAGTTATGA
genomic: ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagatacc ... ctaaatgcagGTTGCCAAAGTTATGA
EST: gi|19053815|gb|BM732482.1|BM732482
EST:     ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACA                         GTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
genomic: ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagatacc ... ctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
EST: gi|51342060|gb|CO983327.1|CO983327
EST:     ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACA                         GTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
genomic: ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagatacc ... ctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
EST: gi|7926538|gb|AW832564.1|AW832564
EST:     ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACA                         GTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
genomic: ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagatacc ... ctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
EST: gi|208135749|gb|GD933682.1|GD933682
EST:     ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACA                         GTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATA
genomic: ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagatacc ... ctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATA
EST: gi|208163103|gb|GD961021.1|GD961021
EST:     ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACA                         GTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT
genomic: ATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagatacc ... ctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatccgatatggaagcaataaatacattctgaattctactcatgctaaatgcagGTTGCCAAAGTTATGAGACCAGTGGTTCTTAGCCTTATACTATATGCCTCTCATGCCCGTACATTTTCTCTGATCAATGGTTACTCCGCTCCCTTAGAGG
                                           tgctaaa  putative branch site (score: 2)
                 aataaatacattct  TA-rich tract