1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atttatgctgttttttgatggaggacccattgaaggagattatttttggatatacaaattgtgatggtttctaatctgagttacatatgtttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGACCCTCCAAAGAAAGAGGGCAAGGATTGCAGATAAGAAGAAGAGAATTGC
species | Glycine max |
transcript | GLYMA13G31130.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGAEST: gi|19269313|gb|BM885569.1|BM885569
genomic: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGA
EST: AGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGAEST: gi|208312736|gb|GE112520.1|GE112520
genomic: AGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGAEST: gi|151407299|gb|EV277114.1|EV277114
genomic: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGAEST: gi|11413313|gb|BF425324.1|BF425324
genomic: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATG GGAANAAAG-TGAGCAAAGCTTCGAAGATACAACGACTGGGCACTCCCCTGEST: gi|151403312|gb|EV273122.1|EV273122
genomic: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAA-AAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTG
EST: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGAEST: gi|207702799|gb|GD684801.1|GD684801
genomic: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGAEST: gi|208249489|gb|GE044594.1|GE044594
genomic: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGAEST: gi|208205180|gb|GE008251.1|GE008251
genomic: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGAEST: gi|208142669|gb|GD944025.1|GD944025
genomic: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGA
EST: TACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGAEST: gi|208312700|gb|GE112162.1|GE112162
genomic: TACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGA
EST: TACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGAEST: gi|26269098|gb|CA820161.1|CA820161
genomic: TACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGA
EST: GAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGAEST: gi|17519909|gb|BM188951.1|BM188951
genomic: GAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGEST: gi|58017152|gb|CX703894.1|CX703894
genomic: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAG
EST: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGAEST: gi|18040763|gb|BM309057.1|BM309057
genomic: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGEST: gi|151412280|gb|EV282092.1|EV282092
genomic: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCG
EST: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATG GGAAAAAAGGTGTGCAAAGCTCCGAAGACACAACGACTGGTCACTCCCCCTEST: gi|21594126|gb|BQ610061.1|BQ610061
genomic: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAA-GGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCC-T
EST: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGAEST: gi|17400921|gb|BM177703.1|BM177703
genomic: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGA
EST: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATG GGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCA
genomic: TGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtc ... ttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCA
ttggatatacaaattgtgatggtttctaatctgagttacatatgtttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGACCCTCCAAAGAAAGAGGGCAAGGATTGCAGATAAGAAGAAGAGAATTGC
ttctaat putative branch site (score: 2)
tatacaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttatgctgttttttgatggaggacccattgaaggagattatttttggatatacaaattgtgatggtttctaatctgagttacatatgtttggttgcagGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGACCCTCCAAAGAAAGAGGGCAAGGATTGCAGATAAGAAGAAGAGAATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - -tgctgtt
- - - - - - - - gatggag
- - - - - - - - - - - - -cccattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatgt