1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...actcatcttacaatatccaataaattgatttcactttgcccccctccctctttactgacagaatgtttcttgttctaaccttcagattttgtctcatcagGTAAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGCGCTCCAGAACTTATATTTGGCGCCACAGAGTATACAAGTTCAATTGATATTT
species | Glycine max |
transcript | GLYMA13G30060.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCTTACACACCAAGTGAAGCTATGTGA-TTTGGAAGTGCAAAAGTTCTA GTAAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGCGCTEST: gi|193486814|gb|FK449205.1|FK449205
genomic: CTCTTACACACCAAGTGAAGCTATGTGATTTTGGAAGTGCAAAAGTTCTAgtaggtctta ... gtctcatcagGTAAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGCGCT
EST: CTCTTACACACCAAGTGAAGCTATGTGATTTTGGAAGTGCAAAAGTTCTA GTAAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGCGCTEST: gi|10231698|gb|BE800586.1|BE800586
genomic: CTCTTACACACCAAGTGAAGCTATGTGATTTTGGAAGTGCAAAAGTTCTAgtaggtctta ... gtctcatcagGTAAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGCGCT
EST: CTCTTACACACCAAGTGAAGCTATGTGATTNTGGAAGTGCAAAAGTTCTA GTAAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGCGCT
genomic: CTCTTACACACCAAGTGAAGCTATGTGATTTTGGAAGTGCAAAAGTTCTAgtaggtctta ... gtctcatcagGTAAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGCGCT
ccctctttactgacagaatgtttcttgttctaaccttcagattttgtctcatcagGTAAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGCGCTCCAGAACTTATATTTGGCGCCACAGAGTATACAAGTTCAATTGATATTT
ttctaac putative branch site (score: 1)
ttttgtctc putative PPT
aatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actcatcttacaatatccaataaattgatttcactttgcccccctccctctttactgacagaatgtttcttgttctaaccttcagattttgtctcatcagGTAAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGCGCTCCAGAACTTATATTTGGCGCCACAGAGTATACAAGTTCAATTGATATTT
- - - - - - - - ccaataaa
- - - - - - - - - - - - - - - - -ctttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accttca