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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccatactataactaattaggggcggtactgctctatgtctttggagttttccagtttctctaacatcatgttctttcaatgtatctatccttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAATTTTGGTGGTGACACTACTAAAATACACTATATTGGCTTTAAAGGCGAA

Basic information

species Glycine max
transcript GLYMA13G29400.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G29400.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv04s0008g00760.t01 (Vitis vinifera), 3'ss of exon 6
ccatactataactaattaggggcggtactgctctatgtctttggagttttccagtttctctaacatcatgttctttcaatgtatctatccttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAATTTTGGTGGTGACACTACTAAAATACACTATATTGGCTTTAAAGGCGAA
  |||  ||  || ||  |    | || | ||       | |    ||||  |     |        |  || |  || |||||| |||| ||  || || ||||||| ||||||| | || |||| | | || |||||||| |||||||| ||||||||||| || ||| | |||| ||||||||| || || || |||
gaatatgattgcttatctgtacagatattactgggctcttctcccattttgtacacagttgttttctactttatgacattgtatcaatccattgaatcagGTATTCTAGATTTCAAGGTGTTGCAAGTCTCACTTTGCACTTCCCTGAGAACTTTGGTGGTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315528|gb|GR825337.1|GR825337
EST:     AATGGGATTTGGTTGAGAATATGCAAGGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: AATGGGATTTGGTTGAGAATATGCAA-GGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|254342188|gb|GR853325.1|GR853325
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|11690379|gb|BF598055.1|BF598055
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|254317765|gb|GR826749.1|GR826749
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|207764167|gb|GD737982.1|GD737982
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAA-GCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|298192219|gb|HO036301.1|HO036301
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|18039284|gb|BM307578.1|BM307578
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|151402759|gb|EV272572.1|EV272572
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|298164736|gb|HO014381.1|HO014381
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|21888807|gb|BQ742020.1|BQ742020
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|298180957|gb|HO022396.1|HO022396
EST:     GAATGGGATTTGGTTGAGAATATGCAATGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|298192873|gb|HO033307.1|HO033307
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAA-TTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGA
EST: gi|254317766|gb|GR826750.1|GR826750
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|208116855|gb|GD915809.1|GD915809
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAACTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|208084942|gb|GD882778.1|GD882778
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTG
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTG
EST: gi|298167595|gb|HO012858.1|HO012858
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|192294103|gb|FG986192.1|FG986192
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|8402306|gb|BE057940.1|BE057940
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATAT-ACCTTGCACTT
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTT
EST: gi|207843207|gb|GD816809.1|GD816809
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|192300261|gb|FG987838.1|FG987838
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|298171596|gb|HO021188.1|HO021188
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAG
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAG
EST: gi|254315527|gb|GR825336.1|GR825336
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|298169227|gb|HO020587.1|HO020587
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|298189728|gb|HO038131.1|HO038131
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAG
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAG
EST: gi|298166356|gb|HO008593.1|HO008593
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|298175426|gb|HO015059.1|HO015059
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAG
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAG
EST: gi|298179820|gb|HO025035.1|HO025035
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|298196871|gb|HO041614.1|HO041614
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|298172694|gb|HO019734.1|HO019734
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|20498002|gb|BQ272932.1|BQ272932
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|151393588|gb|EV263463.1|EV263463
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|207796498|gb|GD769792.1|GD769792
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|298163228|gb|HO011961.1|HO011961
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|254342187|gb|GR853324.1|GR853324
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|298183628|gb|HO028841.1|HO028841
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAG
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAG
EST: gi|207785437|gb|GD756962.1|GD756962
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|208265558|gb|GE063086.1|GE063086
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|51336638|gb|CO980504.1|CO980504
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|151412116|gb|EV281928.1|EV281928
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|12773661|gb|BG238588.1|BG238588
EST:     ATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: ATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|11275065|gb|BF325388.1|BF325388
EST:     GGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
EST: gi|298183208|gb|HO028193.1|HO028193
EST:     GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAG                         ATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA
genomic: GAATGGGATTTGGTTGAGAATATGCAAGGAGTATTGGAATACCAGACAAGgtaatcatta ... ttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttccagtttctctaacatcatgttctttcaatgtatctatccttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAATTTTGGTGGTGACACTACTAAAATACACTATATTGGCTTTAAAGGCGAA
            ctctaac  putative branch site (score: 2)
                                      tctatcctttt  putative PPT
                                             ttttgatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccatactataactaattaggggcggtactgctctatgtctttggagttttccagtttctctaacatcatgttctttcaatgtatctatccttttgattagATATTCTAAATTTCAAAGCGTGGCAAATATTACCTTGCACTTTCCTGAGAATTTTGGTGGTGACACTACTAAAATACACTATATTGGCTTTAAAGGCGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
ccatact
- - - - - - - - - ggggcgg
- - - - - - - - - - - - - -ctgctct
- - - - - - - - - - - - - - - - - - gtctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgta