1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gagctctataagaaaccaaattttcaatacattatgatatccttcatagcatctgttctacatttattgataagtgttttgcttgtttttatgctaaaagGTTCGTGTGCTGGCTTTATCTTGCATAAATTTTGGTGGATACAAGCTTCATCCATATCCTCTGTTGGATCTTTCAAAACTCCTGTTCATAAAG
species | Glycine max |
transcript | GLYMA13G25740.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATCTGCAGTTCTGCATTATGATGCCTTATATCAATGAA GTTCGTGTGCTGGCTTTATCTTGCATAAATTTTGGTGGATACAAGCTTCATEST: gi|19270700|gb|BM886956.1|BM886956
genomic: TATCTGCAGTTCTGCATTATGATGCCTTATATCAATGAAgtaattactg ... atgctaaaagGTTCGTGTGCTGGCTTTATCTTGCATAAATTTTGGTGGATACAAGCTTCAT
EST: CATCATATCTGCAGTTCTGCATTATGATGCCTTATATCAATGAA GTTCGTGTGCTGGCTTTATCTTGCATAAATTTTGGTGGATACAAGCTTCATEST: gi|254324920|gb|GR834345.1|GR834345
genomic: CATCATATCTGCAGTTCTGCATTATGATGCCTTATATCAATGAAgtaattactg ... atgctaaaagGTTCGTGTGCTGGCTTTATCTTGCATAAATTTTGGTGGATACAAGCTTCAT
EST: CTCAGGCATCATATCTGCAGTTCTGCATTATGATGCCTTATATCAATGAA GTTCGTGTGCTGGCTTTATCTTGCATAAATTTTGGTGGATACAAGCTTCATEST: gi|193333698|gb|FK298286.1|FK298286
genomic: CTCAGGCATCATATCTGCAGTTCTGCATTATGATGCCTTATATCAATGAAgtaattactg ... atgctaaaagGTTCGTGTGCTGGCTTTATCTTGCATAAATTTTGGTGGATACAAGCTTCAT
EST: CTCAGGCATCATATCTGCAGTTCTGCATTATGATGCCTTATATCAATGAA GTTCGTGTGCTGGCTTTATCTTGCATAAATTTTGGTGGATACAAGCTTCATEST: gi|208312132|gb|GE109900.1|GE109900
genomic: CTCAGGCATCATATCTGCAGTTCTGCATTATGATGCCTTATATCAATGAAgtaattactg ... atgctaaaagGTTCGTGTGCTGGCTTTATCTTGCATAAATTTTGGTGGATACAAGCTTCAT
EST: CTCAGGCATCATATCTGCAGTTCTGCATTATGATGCCTTATATCAATGAA GTTCGTGTGCTGGCTTTATCTTGCATAAATTTTGGTGGATACAAGCTTCAT
genomic: CTCAGGCATCATATCTGCAGTTCTGCATTATGATGCCTTATATCAATGAAgtaattactg ... atgctaaaagGTTCGTGTGCTGGCTTTATCTTGCATAAATTTTGGTGGATACAAGCTTCAT
atagcatctgttctacatttattgataagtgttttgcttgtttttatgctaaaagGTTCGTGTGCTGGCTTTATCTTGCATAAATTTTGGTGGATACAAGCTTCATCCATATCCTCTGTTGGATCTTTCAAAACTCCTGTTCATAAAG
tattgat putative branch site (score: 3)
tttttat putative PPT
tacatttattgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagctctataagaaaccaaattttcaatacattatgatatccttcatagcatctgttctacatttattgataagtgttttgcttgtttttatgctaaaagGTTCGTGTGCTGGCTTTATCTTGCATAAATTTTGGTGGATACAAGCTTCATCCATATCCTCTGTTGGATCTTTCAAAACTCCTGTTCATAAAG
- - - - - - -aaccaaa
- - - - - - - - - - - - caataca
- - - - - - - - - - - - - - - - - - - -tccttca
- - - - - - - - - - - - - - - - - - - - - - - - gcatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacatt