1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtattttaaatttctatagcactagcttgcccttttttacctaagttatttcacttggtggaacactaacattaagaataaaccaaacttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTGAAGACTTTCCAGAACAAAACTACATTGTCAAGGAGGGTCAACTTGCAA
species | Glycine max |
transcript | GLYMA13G23790.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|17401257|gb|BM178039.1|BM178039
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|42723252|gb|CK769151.1|CK769151
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTEST: gi|6454580|gb|AW185263.1|AW185263
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|42723150|gb|CK769049.1|CK769049
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|214008422|gb|DB989988.1|DB989988
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|42723195|gb|CK769094.1|CK769094
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|22927396|gb|BU544535.1|BU544535
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|4260047|gb|AI416543.1|AI416543
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|15199628|gb|BI423928.1|BI423928
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACCTTATGCCGCTGGGCCCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|6341426|gb|AW164250.1|AW164250
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAATACATGCTTGATAGGCACTTCAAGGGTEST: gi|18735405|gb|BM528746.1|BM528746
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|11688868|gb|BF596544.1|BF596544
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|11274460|gb|BF324813.1|BF324813
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: ATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|18038684|gb|BM306978.1|BM306978
genomic: ATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|11688173|gb|BF595849.1|BF595849
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATTCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|209715917|gb|BW650930.1|BW650930
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|26060128|gb|CA803042.1|CA803042
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: AAACCATGCCATGACTCCTCATATTTCTGGCACCCCCATAGATGCACCAG T-ACGTTATGCTGCTGGGGGCCAAGACCTGCTTGATAGGCACTTCAAGEST: gi|13790807|gb|BG653398.1|BG653398
genomic: AAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCAC-AGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAG
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|6200999|gb|AW153099.1|AW153099
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAG TTACGTTATGCTGCTTGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATAGATGCACAGgtattttaaa ... acttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
taagttatttcacttggtggaacactaacattaagaataaaccaaacttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTGAAGACTTTCCAGAACAAAACTACATTGTCAAGGAGGGTCAACTTGCAA
cactaac putative branch site (score: 1)
cttgttc putative PPT
taacattaagaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttaaatttctatagcactagcttgcccttttttacctaagttatttcacttggtggaacactaacattaagaataaaccaaacttgttcagTTACGTTATGCTGCTGGGGTCAAAGACATGCTTGATAGGCACTTCAAGGGTGAAGACTTTCCAGAACAAAACTACATTGTCAAGGAGGGTCAACTTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG