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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaaatttctcttatacatttgacaaattagtcattttgctctatttgaaatgagtgtgtaaattttgcttagtcaacctttttctcacctgaaaactattcagGAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTGGTGTGGGTTGGTTTCCTACTAGTTCAAGTCATCAAG

Basic information

species Glycine max
transcript GLYMA13G21310.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315128|gb|FK009952.1|FK009952
EST:     TCGACACAAAATATGAACCGTTGATTCCTAAAGAAAAGAAATCAACTATG                         GAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTG
genomic: TCGACACAAAATATGAACCGTTGATTCCTAAAGAAAAGAAATCAACTATGgtatgtaaat ... aactattcagGAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTG
EST: gi|208156079|gb|GD952343.1|GD952343
EST:     GAACCGTTGATTCCTAAAGAAAAGAAATCAACTATG                         GAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTG
genomic: GAACCGTTGATTCCTAAAGAAAAGAAATCAACTATGgtatgtaaat ... aactattcagGAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTG
EST: gi|193585167|gb|FK540722.1|FK540722
EST:     TCGACACAAAATATGAACCGTTGATTCCTAAAGAAAAGAAATCAACTATG                         GAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTG
genomic: TCGACACAAAATATGAACCGTTGATTCCTAAAGAAAAGAAATCAACTATGgtatgtaaat ... aactattcagGAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTG
EST: gi|192317082|gb|FK007849.1|FK007849
EST:     TCGACACAAAATATGAACCGTTGATTCCTAAAGAAAAGAAATCAACTATG                         GAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTG
genomic: TCGACACAAAATATGAACCGTTGATTCCTAAAGAAAAGAAATCAACTATGgtatgtaaat ... aactattcagGAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTG
EST: gi|192317081|gb|FK007848.1|FK007848
EST:     TCGACACAAAATATGAACCGTTGATTCCTAAAGAAAAGAAATCAACTATG                         GAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTG
genomic: TCGACACAAAATATGAACCGTTGATTCCTAAAGAAAAGAAATCAACTATGgtatgtaaat ... aactattcagGAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTG
EST: gi|193460783|gb|FK427552.1|FK427552
EST:     TCGACACAAAATATGAACCGTTGATTCCTAAAGAAAAGAAATCAACTATG                         GAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTG
genomic: TCGACACAAAATATGAACCGTTGATTCCTAAAGAAAAGAAATCAACTATGgtatgtaaat ... aactattcagGAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgagtgtgtaaattttgcttagtcaacctttttctcacctgaaaactattcagGAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTGGTGTGGGTTGGTTTCCTACTAGTTCAAGTCATCAAG
                                 ttctcac  putative branch site (score: 2)
 tgtaaatttt  TA-rich tract