1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atctaaccctccactaataggtggcaacctaggtcacctcattttacttaccgagatatacttttgttgttgctgagccatttattctgtgtatatgtagAATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGCCATTTGAACCTCCATGACAAAGCAGAACAGATTCAAAAAGCCATCCTGA
species | Glycine max |
transcript | GLYMA13G20790.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCACTTGCTGAGGCTGTACATGGTTCGGCACCTGATATTGCTGGAAAG AATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGCEST: gi|22928996|gb|BU546135.1|BU546135
genomic: TTGCACTTGCTGAGGCTGTACATGGTTCGGCACCTGATATTGCTGGAAAGgtaagctgtg ... gtatatgtagAATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGC
EST: TTGCACTTGCTGAGGCTGTACATNNNTCGGCACCTGATATTGCTGGAAAG AATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGCEST: gi|151406995|gb|EV276810.1|EV276810
genomic: TTGCACTTGCTGAGGCTGTACATGGTTCGGCACCTGATATTGCTGGAAAGgtaagctgtg ... gtatatgtagAATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGC
EST: CTGCACTTGCTGAGGCTGTACATGGTTCGGCACCTGATATTGCTGGAAAG AATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGCEST: gi|21677612|gb|BQ629963.1|BQ629963
genomic: TTGCACTTGCTGAGGCTGTACATGGTTCGGCACCTGATATTGCTGGAAAGgtaagctgtg ... gtatatgtagAATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGC
EST: TTGCACTTGCTGAGGCTGTACATGGTTCGGCACCTGATATTGCTGGAAAG AATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGCEST: gi|254321137|gb|GR827586.1|GR827586
genomic: TTGCACTTGCTGAGGCTGTACATGGTTCGGCACCTGATATTGCTGGAAAGgtaagctgtg ... gtatatgtagAATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGC
EST: TTGCACTTGCTGAGGCTGTACATGGTTCGGCACCTGATATTGCTGGAAAG AATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGCEST: gi|22930892|gb|BU548031.1|BU548031
genomic: TTGCACTTGCTGAGGCTGTACATGGTTCGGCACCTGATATTGCTGGAAAGgtaagctgtg ... gtatatgtagAATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGC
EST: TTGCACTTGCTGAGGCTGTACATGGTTCGGCACCTGATATTGCTGGAAAG AATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGCEST: gi|213612273|gb|DB976850.1|DB976850
genomic: TTGCACTTGCTGAGGCTGTACATGGTTCGGCACCTGATATTGCTGGAAAGgtaagctgtg ... gtatatgtagAATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGC
EST: GCACTTG-TGAAGGCTGTACATGTTTCTGTTA-CTGATATTGCTGGAAAG AATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGCEST: gi|7924579|gb|AW830605.1|AW830605
genomic: GCACTTGCTG-AGGCTGTACATGGTTC-GGCACCTGATATTGCTGGAAAGgtaagctgtg ... gtatatgtagAATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGC
EST: TTGCACTTGCTGAGGCTGTACATGGTTCGGCACCTGATATTGCTGGAAAG AATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGGGTTACAATGGTGCGC
genomic: TTGCACTTGCTGAGGCTGTACATGGTTCGGCACCTGATATTGCTGGAAAGgtaagctgtg ... gtatatgtagAATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGC
acttaccgagatatacttttgttgttgctgagccatttattctgtgtatatgtagAATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGCCATTTGAACCTCCATGACAAAGCAGAACAGATTCAAAAAGCCATCCTGA
tacttac putative branch site (score: 1)
atatactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctaaccctccactaataggtggcaacctaggtcacctcattttacttaccgagatatacttttgttgttgctgagccatttattctgtgtatatgtagAATTTGGCAAATCCAACTGCTTTACTGCTAAGTGGTGTTACAATGTTGCGCCATTTGAACCTCCATGACAAAGCAGAACAGATTCAAAAAGCCATCCTGA
- - - -cctccac
- - - - - - - - - - - ggcaacc
- - - - - - - - - - - - - - - - - cacctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agccatt