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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaactgaaaactatcaatttctgcctgcaccagtgtaccctaaataaaaatgttgaaatattggcttttgaattatgaagttgaaattagtatgacacaattgtttgtcatctttacagGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACTGTGAACCAG

Basic information

species Glycine max
transcript GLYMA13G20220.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20220.1 (Glycine max), 3'ss of exon 6
lower sequence: AT3G09740.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgagaactgaaaactatcaatttctgcctgcaccagtgtaccctaaataaaaatgttgaaatattggcttttgaattatgaagttgaaattagtatgacacaattgtttgtcatctttacagGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACTGTGAACCAG
                                            || |  | |      |||  |    ||      | ||   | |  | | |||      | ||  |   | |  | |||||||||||  ||| |||| || |||||||| || ||||||||||||||||| || |||||||||
-------------------------------------------gtagaagacaccacccaaac-tccatttcctttctctgtgttggttagttgtaatctgaactttctgaacttgctcacagGTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGATACCGTGAACCAG

upper sequence: GLYMA13G20220.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0040g02130.t01 (Vitis vinifera), 3'ss of exon 6
gtgagaactgaaaactatcaatttctgcctgcaccagtgtaccctaaataaaaatgttgaaatattggcttttgaattatgaagttgaaattagtatgacacaattgtttgtcatctttacagGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACTGTGAACCAG
                             || |  | | |   | || | ||||| || ||   |   |  ||| | | | |   |  |   | ||| | |  ||| ||  |    ||||||||||||||| ||| |  ||||||| |||||||| |||||||||||||| |||||||| ||||||
----------------------------gtg-ataaattttgtcaaattcaaaatttttaatgctgaacggttggaatcttattatttatcaattatcaaaatatttttcat-gcgtttacagGTGGACAAAGCAACAGCTGACCTCAAGAATACTAATGTTAGACTTAAGGACACTGTTAACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308222721|gb|HO760631.1|HO760631
EST:     GAACTGGATAGACAAGTTCCACTTATGGACGAGATTGACACTAAG                         GTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGAC
genomic: GAACTGGATAGACAAGTTCCACTTATGGACGAGATTGACACTAAGgtgagaactg ... atctttacagGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgaattatgaagttgaaattagtatgacacaattgtttgtcatctttacagGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACTGTGAACCAG
                                           tcatcttt  CT-rich tract
                   aaattagtat  TA-rich tract