1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccttttacacagtaagggcaaacttttggtagtggagtgagattgaagttactttattatggatcctatcattgtcatcttttcatatataaacacgcagGTTGTAAAAGAAACAATTGATTCAAGTGCTACAATAGAATACAAACCAAATACTGCTGATGATCCACACATGAGGAAGCCAGATATTAGCAAAGCGAAGG
species | Glycine max |
transcript | GLYMA13G19640.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTTCAACCTGGGTAACCCTGGGGAGTTTACCATGTTAGAGCTTGCTCAG GTTGTAAAAGAAACAATTGATTCAAGTGCTACAATAGAATACAAACCAAATEST: gi|207771821|gb|GD745592.1|GD745592
genomic: CTTTCAACCTGGGTAACCCTGGGGAGTTTACCATGTTAGAGCTTGCTCAGgtatcttagt ... aaacacgcagGTTGTAAAAGAAACAATTGATTCAAGTGCTACAATAGAATACAAACCAAAT
EST: CCATGTTAGAGCTTGCTCAG GTTGTAAAAGAAACAATTGATTCAAGTGCTACAATAGAATACAAACCAAATEST: gi|19270518|gb|BM886774.1|BM886774
genomic: CCATGTTAGAGCTTGCTCAGgtatcttagt ... aaacacgcagGTTGTAAAAGAAACAATTGATTCAAGTGCTACAATAGAATACAAACCAAAT
EST: CTTTCAACCTGGGTAACCCTGGGGAGTTTACCATGTTAGAGCTTGCTCAG GTTGTAAAAGAAACAATTGATTCAAGTGCTACAATAGAATACAAACCAAAT
genomic: CTTTCAACCTGGGTAACCCTGGGGAGTTTACCATGTTAGAGCTTGCTCAGgtatcttagt ... aaacacgcagGTTGTAAAAGAAACAATTGATTCAAGTGCTACAATAGAATACAAACCAAAT
aagttactttattatggatcctatcattgtcatcttttcatatataaacacgcagGTTGTAAAAGAAACAATTGATTCAAGTGCTACAATAGAATACAAACCAAATACTGCTGATGATCCACACATGAGGAAGCCAGATATTAGCAAAGCGAAGG
atcttttcatatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttttacacagtaagggcaaacttttggtagtggagtgagattgaagttactttattatggatcctatcattgtcatcttttcatatataaacacgcagGTTGTAAAAGAAACAATTGATTCAAGTGCTACAATAGAATACAAACCAAATACTGCTGATGATCCACACATGAGGAAGCCAGATATTAGCAAAGCGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - -ggtagtg