1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatattagacattccctttttccacaaagcaagagcctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAA
species | Glycine max |
transcript | GLYMA13G19500.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCEST: gi|192330021|gb|FK020837.1|FK020837
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCC
EST: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|19346407|gb|BM891287.1|BM891287
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|37996937|gb|CF808526.1|CF808526
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|6133848|gb|AW132241.1|AW132241
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCANAGCTATTGGTCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|9565429|gb|BE474938.1|BE474938
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAC GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGCGTATEST: gi|7587913|gb|AW703719.1|AW703719
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTATCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAA GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|208302025|gb|GE097505.1|GE097505
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: TTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|192324146|gb|FK017877.1|FK017877
genomic: TTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|213593665|gb|DB971687.1|DB971687
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|209719745|gb|BW672120.1|BW672120
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATEST: gi|17154018|gb|BM143951.1|BM143951
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG GGGGAGAAAGATGACCAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
tatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAA
cattaat putative branch site (score: 3)
ttcttttgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattagacattccctttttccacaaagcaagagcctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA