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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattagacattccctttttccacaaagcaagagcctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAA

Basic information

species Glycine max
transcript GLYMA13G19500.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19500.2 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 3'ss of exon 6
gtatattagacattccctttttccacaaagcaagagcctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAA
                                                                    | |  ||  ||    | || || | |    |  |   | ||  |   | | ||      ||  |  |||  |   |  | || |  ||  ||||| |||  |||||||||||| ||||| || |||||||||||||||||||| | |||||||||||||||||||||||| || || ||||| || |||||||
-------------------------------------------------------------------gtttggcttcattccaacatttacaaa---gtccagcgaaatgctattctgatccccatgtttctattctgaccccatgtttgtttgaa--cagGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAA

upper sequence: GLYMA13G19500.2 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os01g74350.1 (Oryza sativa), 3'ss of exon 7
gtatattagacattccctttttccacaaagcaagagcctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAA
                                                                                  | |   |   ||   | | |  |     ||   |||      |||  |  |||     | |  |   | |   || ||||| |||  |||||| ||||| ||||| ||||||||||||||||||||||| | ||||||||| ||||||||||| || || || ||||| ||||||||||
---------------------------------------------------------------------------------gtttg-gtccctactca-acaagtgcgctttcttcagaatgaatgaaca--gattctaaagtggtaa-ggttttatccagGGAGAGGCAGATGATAAGATTATTGCAGTCTGTGCTGATGATCCTGAGTACAAGCATTACAACGATATCAAGGACCTCCCACCTCACCGCTTAGCTGAAA

upper sequence: GLYMA13G19500.2 (Glycine max), 3'ss of exon 6
lower sequence: AT3G53620.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatattagacattccctttttccacaaagcaagagcctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAA
                                                                            || ||||  | |  ||  | |  ||||   ||  | ||  |||      ||||    |        |  || || |  |||  ||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||| | |||||||| || ||||  |||||||| || || ||| | ||||| |
--------------------------------------------------------------------------gttagatattca-acgtacttgt-catattagtacttataaaagtaacagagattga-aactagaagctctttctgcttgaat--agGGTGAGAAAGACGACAAGATCATTGCTGTCTGCGCTGACGATCCAGAGTATCGCCATTACAACGACATCAGTGAGCTTCCGCCTCATCGTATGGCTGAGA

upper sequence: GLYMA13G19500.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 3'ss of exon 6
gtatattagacattccctttttccacaaagcaagagcctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAA
                                                                                  || | | | ||    | |||||| |    |    | | ||| | |   ||||  ||   || |   |||| ||   ||||| ||||||||||||||||||||||| || ||||||||||||||||||||  | || |||| ||||||||| ||||| ||||| |||||||| ||||| |
---------------------------------------------------------------------------------gtagaaaaagatgacaagatatatttcctctcccaattacttctaaaccttgaattaatcttgaccttgattaa-cacagGGAGAGAAAGATGACAAGATAATTGCAGTTTGTGCTGATGATCCTGAGTACCGACACTACACTGATATCAATGAGCTCCCTCCGCACCGTTTGGCTGAGA

upper sequence: GLYMA13G19500.2 (Glycine max), 3'ss of exon 6
lower sequence: PP1S46_53V6.1 (Physcomitrella patens), 3'ss of exon 7
gtatattagacattccctttttccacaaagcaagagcctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatttagcagttcttttgattattgatctaccattaa--ttgtgatcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAA
                             |  || | || |   | |  |   |||| |  |     |          | |||  ||  || |    |||| | |   ||  ||    | |  |  ||  |  |||||   ||||  |||| |  |  |  |||| ||||| ||||||||||| || |||||||||||||| ||||| |||||||| || | ||| || ||||| ||| |||||||||| ||  | || ||||
-----------------------------gtgagggactat---tatgccgtactctttgacggaaaccaaactagcttgtattgat-catgttctcatat-tgttcgtacctaatcatccactatat-gtaaatctaatgttaaatttgtaaggacctgtagGGAGAGAAGGATGACAAGATCATCGCTGTCTGTGCTGACGATCCGGAGTATAGACACTTCAAAGACATCAATGAGTTTCCTCCACATCGACTTGCCGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021657|gb|CX708398.1|CX708398
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|298184004|gb|HO029217.1|HO029217
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCC
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCC
EST: gi|151412335|gb|EV282147.1|EV282147
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|38193105|gb|CF922311.1|CF922311
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|208303442|gb|GE101246.1|GE101246
EST:     TGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: TGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|208226813|gb|GE027764.1|GE027764
EST:     TTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: TTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|11413818|gb|BF425829.1|BF425829
EST:     CAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: CAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|192308688|gb|FK000078.1|FK000078
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATTAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|192330022|gb|FK020838.1|FK020838
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|19346407|gb|BM891287.1|BM891287
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|21888361|gb|BQ741574.1|BQ741574
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|41146349|gb|CK606560.1|CK606560
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|37996937|gb|CF808526.1|CF808526
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|120494697|gb|EH222864.1|EH222864
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|11413799|gb|BF425810.1|BF425810
EST:     GCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|192308689|gb|FK000079.1|FK000079
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATTAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|9565429|gb|BE474938.1|BE474938
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAC                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGCGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|151410176|gb|EV279991.1|EV279991
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCGG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|7587913|gb|AW703719.1|AW703719
EST:     GTTGCTATCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAA                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|192309831|gb|FK002943.1|FK002943
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|151411553|gb|EV281364.1|EV281364
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|193607632|gb|FK560115.1|FK560115
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|209719746|gb|BW672121.1|BW672121
EST:     GTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|192300349|gb|FG987866.1|FG987866
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|8283635|gb|BE021194.1|BE021194
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|120494567|gb|EH222734.1|EH222734
EST:     G-TGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|208192915|gb|GD989266.1|GD989266
EST:     TTGCTTTCTTCGGGCCAAAGCTATTGGTCTCAATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: TTGCTTTCTTCGGGCCAAAGCTATTGGTCTC-ATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|208302025|gb|GE097505.1|GE097505
EST:     TTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: TTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|31312299|gb|CD397502.1|CD397502
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|151396440|gb|EV266317.1|EV266317
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTTTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|213593665|gb|DB971687.1|DB971687
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|8283558|gb|BE021117.1|BE021117
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|9204997|gb|BE331221.1|BE331221
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCNTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|192330021|gb|FK020837.1|FK020837
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|58019190|gb|CX705932.1|CX705932
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|209719745|gb|BW672120.1|BW672120
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|58023065|gb|CX709806.1|CX709806
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|192309832|gb|FK002944.1|FK002944
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|209701983|gb|BW664583.1|BW664583
EST:     TCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: TCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|17154018|gb|BM143951.1|BM143951
EST:     GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGGGAGAAAGATGACCAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|6133848|gb|AW132241.1|AW132241
EST:     GTTGCTTTCTTCGGGCCANAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
EST: gi|8401707|gb|BE057341.1|BE057341
EST:     AAGCTATTGGTCTCATGCCTATGATTGATCAG                         GGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT
genomic: AAGCTATTGGTCTCATGCCTATGATTGATCAGgtatattaga ... tcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAA
                                 cattaat  putative branch site (score: 3)
            ttcttttgattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatattagacattccctttttccacaaagcaagagcctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatttagcagttcttttgattattgatctaccattaattgtgatcaaattcagGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA