1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgaatatttgtattattttaaagttttgtggtttcctatcctaacttgacctggttttttaattttattaattgtatagtaatggtctgtgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAGGTGCATCTCCTTCATCTCCATCTAGGATGCTCAGAACTAAATCAGCTG
species | Glycine max |
transcript | GLYMA13G18950.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAA-G ATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATCCAAGTTTCTTGTTTGEST: gi|298181570|gb|HO025745.1|HO025745
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTA
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAG ATTTCCAAAGAGCAEST: gi|192301726|gb|FG997640.1|FG997640
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCA
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAG ATTTCCAAAGAGCATGGTGGTATCCTGAGEST: gi|151398563|gb|EV268434.1|EV268434
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAG
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAG ATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAEST: gi|151403355|gb|EV273165.1|EV273165
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTA
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAG ATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAEST: gi|254347887|gb|GR854136.1|GR854136
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTA
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAG ATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAEST: gi|213595497|gb|DB966551.1|DB966551
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTA
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCANAG ATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAEST: gi|192312569|gb|FK005027.1|FK005027
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTA
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAG ATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTEST: gi|213591304|gb|DB959874.1|DB959874
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATT
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAG ATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAEST: gi|151397287|gb|EV267160.1|EV267160
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTA
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAG ATTTCCAAAGAGCATGGTGATATCCTGAGATTTATTCAAGTTTCTTGTTTAEST: gi|48575725|gb|CO036542.1|CO036542
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTA
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAG ATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAEST: gi|209709595|gb|BW661922.1|BW661922
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTA
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAG ATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGEST: gi|209714364|gb|BW677064.1|BW677064
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTG
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCANAG ATTTCCAAAGAGCATGGTGGTATCCTGAGAEST: gi|298174324|gb|HO017660.1|HO017660
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGA
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAG ATTTCCAAAGAGCATGGTGGTATEST: gi|192312568|gb|FK005026.1|FK005026
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTAT
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAG ATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAEST: gi|192300056|gb|FG991860.1|FG991860
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTA
EST: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAG ATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTA
genomic: ACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGgtatgttctt ... tgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTA
cttgacctggttttttaattttattaattgtatagtaatggtctgtgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAGGTGCATCTCCTTCATCTCCATCTAGGATGCTCAGAACTAAATCAGCTG
tattaat putative branch site (score: 2)
ttttttaattttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaatatttgtattattttaaagttttgtggtttcctatcctaacttgacctggttttttaattttattaattgtatagtaatggtctgtgagttgcagATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAGGTGCATCTCCTTCATCTCCATCTAGGATGCTCAGAACTAAATCAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG